Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2348 212 2e-52 seq4379 86.0 2e-14 >seq2348 Length=90098 Score = 212 bits (234), Expect = 2e-52 Identities = 312/419 (74%), Gaps = 22/419 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| |||| |||||| |||||| ||||| || Sbjct 45649 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT-TT 45593 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || |||| ||| || |||||| |||| || ||||||| | || | Sbjct 45592 ACCTAAGCTT-CATCCTGGTCAT-GGTTAGATCATCCGGGTT-CGGGTCTGTA-CCTAAT 45537 Query 129 GACTAGACGCCC--TAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT 186 ||| ||| | || ||| |||||||| | ||| | || | ||||| |||| | Sbjct 45536 GACATTGCGCTCGTTATCAAG-CTCGCTTT-CACTATGGCTTCG-TATTC--TTAACCCC 45482 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAA 244 |||| | | | ||||||| | | |||| | ||| ||| ||||||||| | |||| Sbjct 45481 -GCCATTAGATACAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGGCTTGACAAC 45423 Query 245 --GTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 || | | | | ||||||||| || | ||||||| | ||| ||||||||||||| || Sbjct 45422 TCGTAGCCCTTCTGCTGCTTGTAGGCTTCTGGTTTCATGTTCT-TTTCACTCCCCTC-CC 45365 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||| Sbjct 45364 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAGTAATATTT 45305 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| | ||||| || | |||| |||||||| | ||||||| Sbjct 45304 AGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCACGTGCTCCATGCTACTCG 45246 >seq4379 Length=14604 Score = 86.0 bits (94), Expect = 2e-14 Identities = 123/167 (74%), Gaps = 15/167 (9%) Strand=Plus/Plus Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 |||||||| || | |||| || || |||||||||||| |||||||||||| |||| | Sbjct 8090 TTAAGCTT-GCTTGTAAAAAAAACTCACTGACCCATTATGCAAAAGGTACGCCGTCA-CT 8147 Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 || ||| ||||| |||||| || ||| ||| | | || ||||| ||| Sbjct 8148 AATAAA----GCTCCGACTGCTATTAAACATTGAATTTTA--AACT-TTTCA-----CTC 8195 Query 299 TCCGGGGTTC-TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCG 344 || |||| ||||| |||||||||||||||||| ||| ||||||| Sbjct 8196 TCAAAAGTTCTTTTTCACCTTTCCCTCACGGTACTTGTTTACTATCG 8242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241514826240