Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2348 185 2e-44 seq4378 131 3e-28 >seq2348 Length=90098 Score = 185 bits (204), Expect = 2e-44 Identities = 227/309 (73%), Gaps = 27/309 (9%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| || || || |||||||||||||||||||||||||| ||| Sbjct 43432 TCAGGCTTTCGCCCATTGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCG 43373 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||| ||| |||||| | || |||||||| || ||||| |||||||| |||||| Sbjct 43372 TGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 43313 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCT---TTCAGCGATAAAT 189 ||| ||| | |||||||| |||||| ||||||||| ||| ||| ||||||| Sbjct 43312 AGGCCTTTACCCTACCAACTAGCTAATCAGCCGCGAGCTTCTCTCCAGGCAGAGATAAAT 43253 Query 190 CTTTGGTCAAAGAATGA-TGCCATCCTCT------------GACATTATGCGGTATTAGC 236 | || |||| | | | |||| | || |||| ||| ||||| Sbjct 43252 C---------AGTATGACTTACTTTCTCTTTTTCACCCGAGGGCA-TATGGGGTTTTAGC 43203 Query 237 GTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGT 296 | ||||||| |||||| || ||| |||||| | | |||||||||| | ||||||| Sbjct 43202 GAATGTTTCCATCCGTTATCCCCCTCCTAAAGGC-GAATTCTCACGTGTTCCCCACCCGT 43144 Query 297 CCGCCACTA 305 ||||||||| Sbjct 43143 CCGCCACTA 43135 >seq4378 Length=5432 Score = 131 bits (144), Expect = 3e-28 Identities = 124/158 (78%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || || |||||||| |||| |||| || Sbjct 2139 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCTCACTGCTGGCTCCAAATGGAGCCT 2198 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| |||||| |||||||||||||| | |||| |||| | || Sbjct 2199 GGGCCTTGTCTCAGTCCCAGTGTGGCTGTTCAACCTCTCAGAACAGCTAAGGATCTTAGG 2258 Query 127 CTTGGTGGGCTATTATC----TCACCAACTACCTAATC 160 |||||| |||| ||| | ||||||||||||||| Sbjct 2259 CTTGGTAGGCTTTTACCCAAAATACCAACTACCTAATC 2296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998331509760