Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2348 221 3e-55 >seq2348 Length=90098 Score = 221 bits (244), Expect = 3e-55 Identities = 300/407 (74%), Gaps = 11/407 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| || |||| |||| || ||| | | | | Sbjct 46264 CGACTACGCCTCTCGGCCTCGCCTTAGGTCCTGACTAACCCTTCGCGGACGAGCCTTCCG 46205 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | | |||| | | |||||| |||| | ||||||||| ||| Sbjct 46204 AAGGAATCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGCTACTCAAGCCG 46145 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC--ACTGACAC 177 |||||||||| | |||| | | | || | | | |||||| |||| || Sbjct 46144 ACATTCTCACTTCTGTTTCGTCCAACTC-CGCTCTCGCTAAATCTTCACTCTACTG-CAG 46087 Query 178 GACGCTCCCCTACCCA--AC-CACACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | || | | || | | |||| |||||||| ||| ||||| | | Sbjct 46086 AACGCTCCCCTACCGATAACTCTTAAAGCTATCCCACGGCTTCGGCAGATGACTTA-GTC 46028 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 |||||| ||| ||||||| || || ||||||||||||||||||||||||||||||| Sbjct 46027 CCGCTA-ATTTTCGGCGCAAGATTGCTCGACCAGTGAGCTATTACGCACTCTTTCAAGGG 45969 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 | |||||||| |||| |||||||||||||| | || ||| |||||| |||| || Sbjct 45968 TTGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCCTTCTCACTTCCTTTGTCACTTAG 45909 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || || ||||||||||| | || |||||||||||||||||||| Sbjct 45908 CCATCATTTGGGGGCCTTAGCCGGTGGTCTGGGCTGTTTCCCTCTCG 45862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177519216640