Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2348 104 2e-20 seq4378 93.3 4e-17 >seq2348 Length=90098 Score = 104 bits (114), Expect = 2e-20 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| | ||| || | |||| |||||||| ||||||| Sbjct 44326 CGAGTTGCAGCCTGCAATCTGTACTTGGAGTAAGTTTCAAAGATTAGCTTATCCTCGCGA 44267 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || | ||| | |||||||| |||||||| ||||| |||||| ||| Sbjct 44266 ATTTGCAACTTATTGTCTTACCCATTGTAGGACGTGTGTAGCCCAGGGTGTAAGGGGCAT 44207 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||| ||| ||||||||||||||||||||| Sbjct 44206 GATGACTTGACGTCGTCCTCACCTTCCTCCGGTTTGTCAC 44167 >seq4378 Length=5432 Score = 93.3 bits (102), Expect = 4e-17 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 ||| | |||||||||| ||||||| ||||| |||||||||||| |||||||||||| Sbjct 1310 TGTCTTTACCATTGTAGCACGTGTGTAGCCCAGTTCATAAGGGCCATAAGGACTTGACGT 1369 Query 135 CATCCCCACCTTCCTC 150 |||||||||||||||| Sbjct 1370 CATCCCCACCTTCCTC 1385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415972354200