Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2348 150 3e-34 seq4378 100 5e-19 >seq2348 Length=90098 Score = 150 bits (166), Expect = 3e-34 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | |||| | |||||||||| ||||||| | Sbjct 43793 GCTTTCGTCTCTGAGTGTCAGTAATAGCCCAGTAGAGTGCCTTCGCCATCGGTGTTCTTT 43734 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||| ||| | |||||| | || || | ||||||| Sbjct 43733 CCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTCTACCCCTACTATACTCAAG 43674 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||||| | ||||||||| || ||| ||| ||||| Sbjct 43673 TCTCCTAGTTTCTACTGCAGATTTGAGGTTGAGCCTCAAGATTTAACAGTAGACTTAAGA 43614 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || ||| || | |||||| |||| |||||||||||||| ||||| || ||| ||| Sbjct 43613 AACCACCTGCAGACGCTTTACGCCCAGTAAATCCGGATAACACTTGCATCCCCCGTCTTA 43554 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||||||| ||||||||| |||| Sbjct 43553 CCGCGGCTGCTGGCACGGAGTTAGCCGATGCTT 43521 >seq4378 Length=5432 Score = 100 bits (110), Expect = 5e-19 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 190 GCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGC 249 |||||| |||||||| |||| | | ||||||||||||| ||| ||| ||| ||||||| Sbjct 1973 GCCTACGGACCCTTTACGCCCAGTCATTCCGGATAACGCTCGCCCCCTTCGTCTTACCGC 2032 Query 250 GGCTGCTGGCACGTAGTTAGCCGTGGCT 277 ||||||||||||| ||||||||| |||| Sbjct 2033 GGCTGCTGGCACGAAGTTAGCCGGGGCT 2060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828744921060