Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq4379 100 2e-19 seq2348 87.8 1e-15 >seq4379 Length=14604 Score = 100 bits (110), Expect = 2e-19 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| ||||||||||| | ||||| || | |||||||||||||||| | Sbjct 6460 TACCTTTTATCCATTGAGCGATGGTCTTTCCACACAGAACCACCGGATCACTATGTTCAA 6519 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | |||| ||| ||| ||||||| ||| ||||||| |||| Sbjct 6520 CTTTCGTTTCTGCTTGATTTGTAAATCTTGCAGTCAAGCAGGCTTATGCCATTACACT 6577 >seq2348 Length=90098 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | || ||||| ||| | |||||||||| |||| Sbjct 47290 TAACTTTTATCCGTTGAGCGACGACCTTTCCACTCAGGATCGTCGGATCACTAAGACCGA 47231 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | |||| ||||||| |||||| |||||||| || |||| Sbjct 47230 CTTTCGTCTCTGCTTGACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACT 47173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351977362000