Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq274 172 6e-41 >seq274 Length=21802 Score = 172 bits (190), Expect = 6e-41 Identities = 151/184 (82%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 |||||||| |||||||||||||| ||||||||||||| | || | |||||||||| ||| Sbjct 1349 CTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAGGCCCTGAATACATTAGCAT 1290 Query 70 GGAATAATAGAATAGGACGTGCG-GTTCTATTTTGTAGGTTTCTAGGACCGCCC--GTAA 126 ||||||||| ||| ||| | | | |||||||||| ||||| | |||| |||| Sbjct 1289 GGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTTGCA----CGCCAAGGTAA 1234 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| |||| ||||||| |||||| | |||||||||||||| ||||||||||||||||| Sbjct 1233 TGATTAATAGGGATAGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 1174 Query 187 TTAT 190 |||| Sbjct 1173 TTAT 1170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511965974400