Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq4379 95.1 1e-17 seq2348 75.2 1e-11 >seq4379 Length=14604 Score = 95.1 bits (104), Expect = 1e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||| | ||||| ||||||||||||||||||||| | |||||| |||| Sbjct 6473 TTGAGCGATGGTCTTTCCACACAGAACCACCGGATCACTATGTTCAACTTTCGTTTCTGC 6532 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 | || || | ||| |||||||||| |||||||||||| |||| Sbjct 6533 TTGATTTGTAAATCTTGCAGTCAAGCAGGCTTATGCCATTACACT 6577 >seq2348 Length=90098 Score = 75.2 bits (82), Expect = 1e-11 Identities = 110/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| | || ||||| |||| | | |||||||||| |||| |||||| ||| Sbjct 47278 GTTGAGCGACGACCTTTCCACTCAGGATCGTCGGATCACTAAGACCGACTTTCGTCTCTG 47219 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 || || || |||||||||||||| ||| |||| || |||| | |||| || Sbjct 47218 CTTGACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACTCTTCGATCGATTTC 47159 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| | || ||||| |||| ||||||||| Sbjct 47158 TATCCGATCTGAGGAAACCTTTGTGCGCCTCCGTTA 47123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473568526320