Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2348 268 1e-69 seq4379 181 2e-43 >seq2348 Length=90098 Score = 268 bits (296), Expect = 1e-69 Identities = 225/275 (82%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| ||||| || ||||| ||||| Sbjct 47626 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCGTTCCATACATAGCTACCCAG 47567 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| ||| || ||| ||||| || ||||||||||||| Sbjct 47566 CGTTTACCGTTGGCACGATAACTGGTACACTAGCGGTATGTCCTTCTCGGTCCTCTCGTA 47507 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || | ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 47506 CTAGAGAAGGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 47447 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 47446 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 47387 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 47386 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 47352 >seq4379 Length=14604 Score = 181 bits (200), Expect = 2e-43 Identities = 198/261 (76%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| |||||| ||||| | ||| |||||| || || |||| ||| | Sbjct 6140 CTTATATGCTTTCAGCAATTATCTAGTATAAATGTAGCTTTCCGGCCATGCCTTTGATAA 6199 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC--AGCTCC 134 ||||| ||| |||| | ||| ||| |||||||||||||||||| | || | Sbjct 6200 AACAACCGGTATACCATGGATTTACTTTTCCTGGTCCTCTCGTACTAAGGTCTAAGTT-- 6257 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||| |||| ||||| || |||||||||||||||||||| ||||||||| |||| Sbjct 6258 TCTCAGTTTTCTGACGCCTACAGTAGATAGGGACCGAACTGTCTCACGACGTTCTAAACC 6317 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| || | || | ||||||||||| ||||||||| ||| ||||||| ||| Sbjct 6318 CAGCTCACGTACCACCTTCCTCGGCGAACAGCCGAACCCTTGGAACCACCTTCAGCTCCA 6377 Query 255 GGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||| Sbjct 6378 GGATGTGATGAGCCGACATCG 6398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780748110960