Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2348 228 2e-57 seq4378 152 1e-34 >seq2348 Length=90098 Score = 228 bits (252), Expect = 2e-57 Identities = 306/419 (73%), Gaps = 19/419 (5%) Strand=Plus/Minus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| | | | | |||| || ||||||| || ||| |||||||| ||||||| Sbjct 43476 TTTACAACTCAGTAAGTCTTCATCCCCCACGCGGTATTGCTCTGTCAGGCTTTCGCCCAT 43417 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 43416 TGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 43357 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| || ||||||||||||||||| ||||||||||| ||| |||| |||||| || Sbjct 43356 TGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACCCTACC 43297 Query 184 AACTAGCTAATC-CCATCTGGGTTC-ATCC-GATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 |||||||||||| | | | ||| ||| | || || | | | | | | || | Sbjct 43296 AACTAGCTAATCAGCCGCGAGCTTCTCTCCAGGCAGAGATAAATCAGTATGACTTACTTT 43237 Query 241 ---TTGGTCTTGCGACG--TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTC 295 || || ||| | |||| ||| ||||| | ||||||| |||||||||||| Sbjct 43236 CTCTTTTTCACCCGAGGGCATATGGGGTTTTAGCGAATGTTTCCATCCGTTATCCCCCTC 43177 Query 296 CATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGC 355 | |||| ||| || || | ||||||||||||||| || | || | Sbjct 43176 CTAAAGGCGAATTCTCACGTGTTCCCCACCCGTCCGCCACT---------AGAATTAACC 43126 Query 356 TGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | || ||||||||||||||||||||||| | ||||||||||||| ||||| Sbjct 43125 GGGAT-TAATTCTCGTTCGACTTGCATGTGTTAGGCATACCGCCAGCGTTCATCCTGAG 43068 >seq4378 Length=5432 Score = 152 bits (168), Expect = 1e-34 Identities = 151/195 (77%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 6 TTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTG 65 ||||||| ||| |||||||||| || | | || |||| |||| |||| ||| ||||| Sbjct 2103 TTACAACTTGAAAGCCTTCTTCACTCATGTAGTATTGCTGGATCAAGCTTTCGCTCATTG 2162 Query 66 TGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 125 | ||| ||||| |||||||| |||| |||| |||| || ||||||||| |||||||| Sbjct 2163 TCCAAAATTCCTCACTGCTGGCTCCAAATGGAGCCTGGGCCTTGTCTCAGTCCCAGTGTG 2222 Query 126 GCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC----CG 181 |||| ||| ||||||||| |||||| ||||| | | || ||| ||| |||||| Sbjct 2223 GCTGTTCAACCTCTCAGAACAGCTAAGGATCTTAGGCTTGGTAGGCTTTTACCCAAAATA 2282 Query 182 CCAACTAGCTAATCC 196 ||||||| ||||||| Sbjct 2283 CCAACTACCTAATCC 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222316143360