Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2348 336 7e-90 seq4378 255 2e-65 >seq2348 Length=90098 Score = 336 bits (372), Expect = 7e-90 Identities = 286/346 (83%), Gaps = 6/346 (2%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||| | Sbjct 43278 CGCGGCTGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGCGACGATCAGTAGCTGGT 43337 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 43338 CTGAGAGGACGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 43397 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || |||||||| ||||||||| ||||| ||||||| | ||||| Sbjct 43398 CAGTGAGGAATTTTCTGCAATGGGCGAAAGCCTGACAGAGCAATACCGCGTGGGGGATGA 43457 Query 340 AGGCCTTC-GGGTCGTAAAGCTCTGT-CCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 || | | | | || ||||| ||| || || |||||||| |||||||||||| || Sbjct 43458 AGACTTACTGAGTTGTAAACCTCGGTACCCTAAGGAAGAAGATATGACGGTACTTAGGGT 43517 Query 396 GG-AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 || |||| ||||||||| |||||||||||||||||||| ||| || || || ||||| Sbjct 43518 GGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTAT 43577 Query 455 CCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||||| |||||||||| || | ||||||||||||||||| Sbjct 43578 CCGGATTTACT-GGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTC 43622 >seq4378 Length=5432 Score = 255 bits (282), Expect = 2e-65 Identities = 252/324 (78%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAA----GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 |||||| ||||||||| ||||| || ||||||| | | |||| |||| | ||| Sbjct 2296 GATTAGGTAGTTGGTATTTTGGGTAAAAGCCTACCAAGCCTAAGATCCTTAGCTGTTCTG 2237 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||| | |||||| ||| ||||||||| || ||| |||| |||| |||||| Sbjct 2236 AGAGGTTGAACAGCCACACTGGGACTGAGACAAGGCCCAGGCTCCATTTGGAGCCAGCAG 2177 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 || ||||| ||| |||||| || ||||| |||| |||||| | | |||| || ||||| Sbjct 2176 TGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACTACATGAGTGAAGAAGG 2117 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCC 402 | ||| || |||| |||| | | |||| ||||||||| ||||| | | |||| Sbjct 2116 CTTTCAAGTTGTAACACTCTTTGGTTGAGGAGGATAATGACAGTACTCAACAAAATAGCC 2057 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||| Sbjct 2056 CCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGGAATG 1997 Query 463 ACTGGGGCGTAAAGGGTGCGTAGG 486 ||| ||||||||||||| |||||| Sbjct 1996 ACT-GGGCGTAAAGGGTCCGTAGG 1974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497497264640