Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2348 269 6e-70 seq4378 187 6e-45 >seq2348 Length=90098 Score = 269 bits (298), Expect = 6e-70 Identities = 308/410 (75%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAA-GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59 ||||| || |||| || ||||||||| |||||||||||||||||||| ||| || | Sbjct 43508 TACTTAGGGTGGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATG 43567 Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG 119 | || |||||||||| ||||||||||||||| || | ||||||||||||||||| | Sbjct 43568 CAAGTGTTATCCGGATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTG 43627 Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG 179 | ||| | ||||||||| | |||| | |||||| | || |||| || || Sbjct 43628 TTAAATCTTGAGGCTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAG 43687 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | |||||| | |||| |||||||||||||||||||||| | | ||||||| || Sbjct 43688 GGGTAGAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATG 43747 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||| | |||| || | ||||||||| || ||||||| |||||||||| Sbjct 43748 GCGAAGGCACTCTACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATG 43807 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT- 358 ||||||||||||| ||||||| ||||||||||||| ||||| | ||| || || || Sbjct 43808 GGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTCGATGT-TGGACGTATC 43866 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | || | ||| ||||| ||||||| || ||||||||||| Sbjct 43867 GACCCGTTCAGTATCTTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 43916 >seq4378 Length=5432 Score = 187 bits (206), Expect = 6e-45 Identities = 238/325 (73%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 |||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| Sbjct 2060 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGG 2001 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGC 133 ||| |||||||||||||||| |||||| | | || || || || ||| | || Sbjct 2000 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTGGAAGTTAAATAAAAAAGC 1941 Query 134 TCAACCCCGGGACTGCTTTTGAAAC-TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 | || | | |||| | |||| | | | | |||| || | || |||| Sbjct 1940 TTAA-CTTTTTTCCGCTTCTAAAACGTAAATGCTTTGAGTTTGATAGAAGATAGCAGAAT 1882 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | | || ||||| || | |||| | | ||||| | ||| |||||||||||| Sbjct 1881 TTCACAAGGAGGGGTGATATCCAGAGATCTGTGAAGGAATATCAGATGCGAAGGCGGCTA 1822 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 || || |||||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 1821 TCTAGATCAACACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAGATACCC 1762 Query 313 TGGTAGTCCACGCCGTAAACGATGA 337 |||||||||| ||| |||| ||||| Sbjct 1761 TGGTAGTCCATGCCCTAAAAGATGA 1737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203117460480