Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2348 232 2e-58 seq4379 134 5e-29 >seq2348 Length=90098 Score = 232 bits (256), Expect = 2e-58 Identities = 390/551 (71%), Gaps = 39/551 (7%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||| || ||||||| ||||| ||||||||||| | ||||| || |||| Sbjct 45546 AGACCCGAACCCGGATGATCTAACCATGACCAGGATGAAGCTTAGGTAAAACTAAGTGGA 45605 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| || Sbjct 45606 GGTCCGAACTGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 45665 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG--GTAGTGCCTCAAGTA 211 || | || ||| |||||||||||| |||||| | ||||| | || | | | | Sbjct 45666 AATCGAATCCGGAGCTAGCTGGTTCTCCCCGAAATGTGTTTAGGCGCAGCGGTTGACAGA 45725 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGG--GGTCATTGCGACTTACCAAACCA 269 || || |||||| ||||||||| || ||| ||| ||| || ||||||| | Sbjct 45726 AAAC--TCAGGGGTAAAGCACTGTTTCGGTGCGGGCTGGTAATT-CG--GTACCAAATCG 45780 Query 270 TTGCAAACTCCGAATGCGCATCAGT---TTTACCGCGGGAGTGAG--GGCA--------- 315 |||||||| |||| | | ||| | | | |||| ||| | || Sbjct 45781 AGGCAAACTCTGAATAC---TGAGTGCCCCTCCGTCAGGAGGGAGGCGTCAACTAGTAAG 45837 Query 316 ----TGGGTGCTAAGGTCC-GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCC 370 |||| | |||| ||| ||| ||||||| || | || ||| | | ||||||||| Sbjct 45838 ACTCTGGGGGATAAGCTCCAGTG-TCGAGAGGGAAACAGCCCAGACCACCGGCTAAGGCC 45896 Query 371 CCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGG 430 || |||||| ||||||| || || ||||| || ||| | ||| | |||| ||| | Sbjct 45897 CCCAAATGATGGCTAAGT--GACAAAGGAAGTGAGAAGGCTGAAACAACCAGGAGGTTTG 45954 Query 431 CTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCG 490 ||| ||||||| || | || ||||||||||||| |||||||| |||||| | || ||| Sbjct 45955 CTTAGAAGCAG-CAACCCTTGAAAGAGTGCGTAATAGCTCACTGGTCGAGCAATCTTGCG 46013 Query 491 TGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT--CATTTATA-TGATC 547 || ||| | |||| | ||||| ||| ||||||| ||||||| | || | | | ||| Sbjct 46014 CCGAAAATTAGCGGG-ACTAAGTCATCTGCCGAAGCCGTGGGATAGCTTTAAGAGTTATC 46072 Query 548 GGTAGGGGAGC 558 ||||||||||| Sbjct 46073 GGTAGGGGAGC 46083 >seq4379 Length=14604 Score = 134 bits (148), Expect = 5e-29 Identities = 184/254 (72%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGC---GGTAACACGCCCTGG 92 ||||||||| |||||||||| | ||| |||| |||| | || |||| ||| Sbjct 8040 ACCCGAAACTAAGTGATCTAACTATGAACAGGTTGAAAATTTAATGGAAACATTAATTGG 7981 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||| | |||||||||||| ||||||| ||||| |||||||||||||| Sbjct 7980 AGGACCGAACTCGTGTATGTTGAAAAATACTGGGATGATTTGTGGTTAGGGGTGAAAGGC 7921 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTG-CCTCAAGTA 211 ||| ||||||| || |||||||||| || ||||| ||||||| |||| | |||| | Sbjct 7920 TAATCAAACTTAGAGATAGCTGGTTTTCCGCGAAATCTATTTAAGTAGAGTGTTCAAAAA 7861 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGA-CTTACCAAACCAT 270 | | ||||||||||||| ||||||||| || || |||||| ||| Sbjct 7860 AGAAAAATTGGGGTAGAGCACTCCATAAGCTAGGGGGGTTTTCGGATCTTACCGAACTTA 7801 Query 271 TGCAAACTCCGAAT 284 | ||||||||||| Sbjct 7800 AGGAAACTCCGAAT 7787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689484093440