Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2348 120 6e-25 >seq2348 Length=90098 Score = 120 bits (132), Expect = 6e-25 Identities = 171/237 (72%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 ||| |||| ||||||| | | | ||||||||||||| | | |||||| ||| ||| Sbjct 44835 TGGGGGATACCTTGGCATTCAGAAGCGATGAAGGACGCGATGACCGGCGATACGCTCCGG 44894 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | ||||| | |||||||||| || |||||||||| || ||| | | | | Sbjct 44895 GGAGCGGGCAAAAAG-CTTTGATCCGGAGGTTTCCGAATGAGGCAACTC----CATAGA- 44948 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | | ||||||||| | | || ||||||| || |||||||||||||| || Sbjct 44949 --ACTTCTTCCCGAATACATAAGGAAAAAAGAGCGAACCTGGGGAACTGAAACATCTTAG 45006 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 || | ||||||| ||| || ||||||| ||||| |||||||||| ||||| Sbjct 45007 TACCCAGAGGAAAAAAAAGTAAAAACGATTCCCTTAGTAGCGGCGAGCGAACTGGGA 45063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918336997760