Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq272 628 8e-178 >seq272 Length=3680 Score = 628 bits (696), Expect = 8e-178 Identities = 465/536 (87%), Gaps = 10/536 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| |||||| Sbjct 827 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTAACCTTAGGACACCTGTGTTATG 886 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||| |||| | | |||| Sbjct 887 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGTTGTCTCCCGCGTAGATC 946 Query 127 G--GCCCGCGAAGGAC-CTTAACGCCAGAAAATGGT-CGGTGAAG--ACCAGT-TCCGCT 179 | | || |||||| | ||||| | |||| || | |||||| || | || | Sbjct 947 GCGGGCCTCGAAGGCCGCTTAAATCTAGAACCAGGCGCCGTGAAGCGACTGGACTCTACG 1006 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 || || ||||||||| ||| || | |||||||||||||| ||||| | |||| Sbjct 1007 CCACGGAATAAGTAAAACAACATTACGAGTAGTGGTATTTCATCGTCGCCGGA---GCTC 1063 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1064 CCACTTATGCTACACCTCATAAGTCATTTCACAACGTCGGACTAGAGTCAAGCTCAACAG 1123 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1124 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATG 1183 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1184 GCAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGACG 1243 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1244 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 1303 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1304 AATTCCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 1359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635087825280