Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2348 237 5e-60 seq4379 163 1e-37 >seq2348 Length=90098 Score = 237 bits (262), Expect = 5e-60 Identities = 400/569 (70%), Gaps = 24/569 (4%) Strand=Plus/Minus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||| |||||||||||||||| |||| ||| |||||||| | |||| | | Sbjct 47215 GACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACTCTTCGATCGATTTCTAT 47156 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 || |||||| |||||||| ||||||||||||| |||| ||||| | ||||||||||| Sbjct 47155 CCGATCTGAGGAAACCTTTGTGCGCCTCCGTTACCTTTTAGGAGG-CGACCGCCCCAGTC 47097 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC-ACT 181 ||||| |||||| || | ||||| | ||| ||| | || | || ||| |||| | Sbjct 47096 AAACTGCCCACCTGGGAGTGTCCTCTCCCCGGATTACGGTAGAGAGTGAGA-ATCCGAGC 47038 Query 182 ACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATCATA 238 |||||||||| ||| | | ||||| | |||| || | ||| Sbjct 47037 TTTAAAAGAGTGGTATCTCACGATTGGCTCCAAAGATCCCACAAGAC---CTTTTTCAAT 46981 Query 239 GTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG 296 | ||||||||||| || | ||| | | | || | |||| ||||| | ||||||| Sbjct 46980 GCCTCCCACCTATTCTGCGCAAGTAAAGACCAGATT--CAATCCCAAGATGCAGTGAAGC 46923 Query 297 TCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | |||||||| |||| | || ||| ||||||| || | | ||||| Sbjct 46922 TTCATAGGGTCTTTCTGTCCAGGTGCAGGAAGTCCGCATCTTCACAGACAGGTCTATTTC 46863 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 |||| | || | |||||||| | |||||||||| ||||||| ||||||||||| Sbjct 46862 ACCGAGTCTCTCTCCGAGACAGCGTCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTT 46803 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||| Sbjct 46802 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGG 46743 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 ||||| | | || | | || | | | || ||| |||||||||| || Sbjct 46742 CTTCAGTAATTAGCTTTGCTTAC------GCGAACCAAC--GTC--TTTAACCTTCCGGC 46693 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTCG 564 || ||||||||||||| || |||| ||| Sbjct 46692 ACTGGGCAGGCGTCAGCCCCCATACATCG 46664 >seq4379 Length=14604 Score = 163 bits (180), Expect = 1e-37 Identities = 202/278 (73%), Gaps = 20/278 (7%) Strand=Plus/Plus Query 287 ATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTA 345 ||||| ||||| | |||||||| |||| || | | || |||||| || || Sbjct 6776 ATAGTAAAGGTGCATAGGGTCTTTCCGTCTAGCTGTAGGTAATCTGCATCTGCACAGATA 6835 Query 346 CTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAG 405 | ||||||||| | | |||| |||||||| ||| ||||||||| |||||| ||||| Sbjct 6836 TTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCGTTACACCATTCATGCAG 6895 Query 406 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465 ||||||||||||||||||||||||||||||||||| ||| || | |||||| |||||| Sbjct 6896 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTCAGAGTTACAGCCGCCG 6955 Query 466 TTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTA 525 ||||||||| ||| | ||| ||| | ||| | ||| ||| Sbjct 6956 TTTACTGGGACTTAAGTTAAAGGCC---AAAACCTC----------------TCCCTTTA 6996 Query 526 ACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 | ||| |||||||||||||| |||||||| ||||| || Sbjct 6997 ATCTTACAGCACCGGGCAGGTGTCAGTCCCTATACATC 7034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702283215360