Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2348 149 1e-33 seq4378 93.3 9e-17 >seq2348 Length=90098 Score = 149 bits (164), Expect = 1e-33 Identities = 152/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 85 GAAGTTTACAA-TCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCG 143 || |||||||| || ||| | |||||||| ||||| | ||| |||| || ||| Sbjct 43480 GAGGTTTACAACTCAGTA-AGTCTTCATCCCCCACGCGGTATTGCTCTGTCAGGCTTTCG 43422 Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 |||||| || |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 43421 CCCATTGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 43362 Query 204 CAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263 || ||||| || | |||||||||| | ||| ||||| | || ||| |||| ||||| Sbjct 43361 CAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACC 43302 Query 264 CCGCCTACTACCTAAT 279 | || |||| ||||| Sbjct 43301 CTACCAACTAGCTAAT 43286 >seq4378 Length=5432 Score = 93.3 bits (102), Expect = 9e-17 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| ||| || ||| ||||| |||| |||||||||||||| |||| |||| | Sbjct 2139 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCTCACTGCTGGCTCCAAATGGAGCCT 2198 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || || ||||||||| ||| ||||| | | ||||||||||| ||| ||| |||| Sbjct 2199 GGGCCTTGTCTCAGTCCCAGTGTGGCTGTTCAACCTCTCAGAACAGCTAAGGATCTTAGG 2258 Query 247 CTAGGTGGGCCGTTACCC----CGCCTACTACCTAAT 279 || ||| ||| |||||| || |||||||||| Sbjct 2259 CTTGGTAGGCTTTTACCCAAAATACCAACTACCTAAT 2295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068726680320