Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2149 379 2e-100 seq1319 174 1e-38 >seq2149 Length=43014 Score = 379 bits (420), Expect = 2e-100 Identities = 1164/1770 (66%), Gaps = 60/1770 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| ||||||||||| || |||| || | | ||||| || |||||||||||||| Sbjct 35114 ATCCACCGTGAACTGTATGGCATCCGCCTTGGGCCGGGTCCGTAGGTAGTACATGCCGGT 35055 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 |||||| || ||| | |||||| ||||| || | | | |||| |||| | Sbjct 35054 CTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAGGTGAGCTGTGCAGGCGTCGGATT 34995 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||||| ||| ||||| | ||||| |||| |||||| || || || || ||| Sbjct 34994 GGCCAAATGGATATTGAGAGACTGCGACTGACAGATGTAGGCGCCGCGGTCGGCGGCCTG 34935 Query 65257 GTCAATGATACGACGTC--CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 ||| || | | || || ||| |||||||| || |||||||||||| | ||| Sbjct 34934 GTCGATCACGC-ACTTCTGCCGG-ATCTCCCACACTGTCTTGTACAGGTCCTTGAGCTCC 34877 Query 65315 ATTGGAAT-CT--CCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGC 65371 || || || || || | ||||||||| || | | ||||| |||| || Sbjct 34876 CGAGGGATGCTGGCCACATT---CTGGACTGAGCCCCTGTTGCCCATAATTTGATTTCG- 34821 Query 65372 ATCGACT-CTGA---CCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGAT 65427 |||| | || ||||| || ||||| || | | | || || || | Sbjct 34820 ---GACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGGAGCAGGTACTTGTTCAC 34764 Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 || ||| ||||| | || || |||||| || ||||| || |||| || |||| Sbjct 34763 CACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGTGAAAGGCTCAAC 34704 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 || || ||||||| || || || ||||||||||| || |||||||| |||| ||| | Sbjct 34703 AGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGGTGCGAGCAATAG 34644 Query 65548 TGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGG 65607 |||||| || | |||| | | | ||| || || || |||||| ||| || Sbjct 34643 TGAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGTAAACCGGCCCAGTCCCAG--CGA 34586 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 || | | || || |||||| || ||| | | || | || || || Sbjct 34585 GTTGAGGGGGTCA----CGCCCCACATGTCGAATTGGAAGACGCCCTTGCTCATGGGGGA 34530 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG-GTCTCGAGTG 65726 ||| ||| | ||||| ||||||| | | || | | || | | ||| | | Sbjct 34529 GCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCGACGCCTCTACCG 34471 Query 65727 CGGCAAAATAAATGGTCTCGAAAATG-CGTCGATTAAGTTCACGTGCCTCATCGCTCTCG 65785 | | || || ||||||||||||||| | | | ||||| | | ||||| |||| Sbjct 34470 CCCCGAAGTACATGGTCTCGAAAATGTCCTTG-TTAAGCTGCTGGGCCTCCGGAGACTCG 34412 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 | || | | |||| || || | ||| |||| ||| || || || || |||||||| Sbjct 34411 AATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACGCCGATCCCGATGGGG 34352 Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905 || || |||| || || || || || || ||||||||||| ||||| ||||| | | Sbjct 34351 CGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGACG 34292 Query 65906 CGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGT 65965 || |||| || ||||||||||| | | ||| || | | | || || || Sbjct 34291 CGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGCTGCAGGTCGTAA-GT 34233 Query 65966 TTAGGACGA--TCGGGAGTGCCGGACACCACAAACTTGG--GAAGG--GCAAGA------ 66013 || || || | | ||||| || | ||||| ||| | | ||| Sbjct 34232 ---GGGCGTCTTCCCGC-TACCGGAGCCCTCCC-CTTGGATGAATGCGGAAAGGTTCACG 34178 Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || ||||||||||| || | ||| || || | || ||||||| || || |||||| Sbjct 34177 GAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATCTCCGTGCAC 34118 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 ||||| | ||||||||||| ||||| || || || | ||||| || ||| Sbjct 34117 AGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCC 34058 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||| ||| |||||| || ||||| ||||| || ||||| || | || ||| ||| || Sbjct 34057 TTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCA--GA 34000 Query 66194 GC-GC-GTGCCTTCA---CCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGA 66248 || || | ||||| | || | ||| | || || || ||||| |||||| Sbjct 33999 GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCCCACTCTTC---TCGTAGCTGGCGTAGA 33943 Query 66249 GGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCA 66308 | || | || || || || || || | ||| | || |||| || || || | | Sbjct 33942 GCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAA 33883 Query 66309 GCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGT 66368 | ||||| || || || || || || ||||| || || || || |||||||||||| Sbjct 33882 GGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGT 33823 Query 66369 AGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACT 66428 |||| ||||| ||||| || | | ||| ||||||| || || |||| ||| ||||| | Sbjct 33822 AGAACAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATT 33763 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||||||||| |||||||| || || |||||||||||||| || ||| | || ||||| | Sbjct 33762 CAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTC 33703 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | || |||||||||||||| || || |||||| || || | ||| ||||||| |||| Sbjct 33702 CGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGT 33643 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608 | || |||| || | || ||| ||| |||| ||||| || | ||| | | Sbjct 33642 TGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATA 33583 Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668 ||||| ||||| || || || |||||||| || | | || | | |||| Sbjct 33582 CGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGC 33523 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 |||| |||||||| |||| |||||||||||| |||| || |||||||| |||| Sbjct 33522 CGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTG 33463 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGT--AAAGTAATGGCGAGACATGTAATT 66786 || |||| ||| || || || ||||| ||||| ||||| | | | |||||| ||| Sbjct 33462 TGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGT--TTGAGCGACATGAGATT 33405 Query 66787 GTACGTCTCGATGACAGCATCAATGTTTTC 66816 ||| ||||| | | || |||||||| || Sbjct 33404 GTAGGTCTCCAGCGCCGCGTCAATGTTCTC 33375 >seq1319 Length=24917 Score = 174 bits (192), Expect = 1e-38 Identities = 380/565 (67%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 65989 CACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC 66048 ||| || || ||||| || | | || || ||||||||||| || | ||| || | Sbjct 8989 CACAACGAATTTGGGCAGCACCACCGACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCT 9048 Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 || || | ||| || |||||||||||||| | ||||||||||| |||||||| Sbjct 9049 CGTGTATTGGACGATCTCGGTGCACAGATTGGATGACTTGATGGTGCCCAAGTTCTGTTG 9108 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| || |||||||||| |||||| || ||||| ||||||| || Sbjct 9109 GTTGCTCTTCAGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTG 9168 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTT 66227 || || | |||||| ||| | | | || ||| || | | | | | || | Sbjct 9169 CGAGTCCAAGATGGCAAACCACAAGTCCTGAGCACGCACTGT-CTTCTTGACTCGGCCCT 9227 Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATG 66287 |||||||| | | || |||| ||||| | || || | |||| | Sbjct 9228 CTCGTTCGTATTTTAAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGG 9287 Query 66288 GACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347 | |||| | |||||||| || ||||| | ||||| || || | ||| || | Sbjct 9288 GGCACTGATCGGGACACATGAGGGACCAGGTCCTATCCTCCTCCACCCTCTCCATGAACA 9347 Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407 | || || ||||| || | ||||||||||| || || || |||||| | ||||| | Sbjct 9348 GGTCGGGAATCCATAGTCCATAGAAGAGATCCCGGGCCCGCGCCTCCTCCTTTCCGTGGT 9407 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | || |||| ||| || | ||||||||||| || ||||| || |||||||||||||| | Sbjct 9408 TCTTCCGCAGGTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAA 9467 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGA 66524 | | || | ||||| || || ||||| |||||||| || ||| || ||||| Sbjct 9468 AGGCCCCTGGCCTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGAC---GTCGAAGA 9524 Query 66525 CACGCAACATCGGTACGAGCCCGTT 66549 | | | ||| || || || ||||| Sbjct 9525 CCCTGAGCATGGGCACCAGACCGTT 9549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534760830400