Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq407 93.3 2e-13 >seq407 Length=52422 Score = 93.3 bits (102), Expect = 2e-13 Identities = 186/273 (68%), Gaps = 7/273 (3%) Strand=Plus/Minus Query 351018 GCGGGCTCACCATGTTGGAGGCCACGTCCATGAGGGTGGCTCCGTCGGCGCGCGCGGCCA 351077 |||| |||||| ||| |||| |||| |||| |||||||| | || || ||||| || Sbjct 30437 GCGGAGTCACCAGGTTCGAGGTCACGCCCATCAGGGTGGCCGCCTCCGCCCGCGCCTCCT 30378 Query 351078 GATCCTGCACGGC--GTGGCCGTTGGTCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTG 351135 ||| ||| ||| ||| ||||||| ||||| |||||||||||||||||| Sbjct 30377 CCGTCTGG--GGCAGGTGCATGTTCATCTCGTCGCCGTCGAAGTCGGCGTTGTAGGGCGC 30320 Query 351136 GGTGACCGACGGGTTGATGCCGATGGTGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCAC 351195 | || || ||||| || || ||| | || || || | | || ||||| | Sbjct 30319 GCACACGCACTCGTTGAAGCGGAAGGT---CCGCCAGGGCATGACCTTGACCCGGTGGGC 30263 Query 351196 CATGATGGACCCGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGATGTCGCCATCGCG 351255 ||||||||| ||||| || | |||||| || ||| || | || ||| |||| Sbjct 30262 CATGATGGAGAGCTTGTGCAGGGAGGGCTGTCGGTTGAAGAGAACGACGTCCTCATCCAC 30203 Query 351256 CAAGTGCCTCTCCACCTTGTCGCCGAGGATCAG 351288 || ||||| ||||||| ||| || || |||| Sbjct 30202 CATGTGCCGCTCCACCACGTCCCCCAGCTTCAG 30170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084551495294280