Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F001614215.1_202016-04- 08] 6,860 sequences; 25,618,953 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2348 717 0.0 >seq2348 Length=90098 Score = 717 bits (794), Expect = 0.0 Identities = 729/950 (77%), Gaps = 0/950 (0%) Strand=Plus/Plus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| | || ||||||||||||| || | |||||||| || | || |||| || Sbjct 63551 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 63610 Query 159890 ATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 159949 | |||||||||| |||| |||||||| || || || || || |||||||| ||||||||| Sbjct 63611 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 63670 Query 159950 CCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCT 160009 || || ||||| ||||| | ||||| |||||||| ||| | ||||| ||| |||| | Sbjct 63671 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 63730 Query 160010 TCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGG 160069 || ||||| |||||| |||||||||| || |||||||||| || || | ||||| ||| Sbjct 63731 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 63790 Query 160070 CTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCC 160129 || || ||||||||||||| |||||| ||||| || |||||| | | || | | | Sbjct 63791 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 63850 Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 || ||||| ||||| |||||||| |||||| | || |||||||| ||||| | || Sbjct 63851 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 63910 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 || | ||| |||||||| ||||| || ||| |||||| | | ||||| |||| || Sbjct 63911 GCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAA 63970 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 ||| ||||| |||| ||||||| | ||||||||||||||||| |||| ||| | ||| Sbjct 63971 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTA 64030 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTA 160369 ||||||||||||||||| || |||||||| || ||||| ||| ||||||||||| || Sbjct 64031 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 64090 Query 160370 TTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGA 160429 || ||||||||| | ||| ||| |||||||| ||||| || || |||||| | || | Sbjct 64091 TTTGGTGGATCTTTATTCAGTGCAATGCATGGTTCTCTTGTAACATCTAGTTTAATCCGT 64150 Query 160430 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACT 160489 || || ||| || || ||||| |||||||| || || ||||| ||||| ||| Sbjct 64151 GAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACT 64210 Query 160490 TACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTT 160549 ||||||||||| || ||||| || ||||| || ||||| ||||||||||| ||| || Sbjct 64211 TACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTC 64270 Query 160550 AACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTC 160609 ||||||||||| || | ||||||||| | ||||||||||| ||||| || |||||||| Sbjct 64271 AACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTA 64330 Query 160610 ACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCC 160669 ||||| ||||| || || ||||||||||| | || || |||||||||||||| || Sbjct 64331 ACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCA 64390 Query 160670 ATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGT 160729 | | || | |||||| | || | ||||||||||| ||| | | ||||| |||| | Sbjct 64391 GTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGAT 64450 Query 160730 CTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGA 160779 | || |||||||| |||||||| |||||||| |||||||||||||| || Sbjct 64451 TTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 64500 Score = 562 bits (622), Expect = 3e-155 Identities = 734/1005 (73%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 || |||||| | ||||||||||||||||| ||| |||| ||||| || ||| | | ||| Sbjct 5087 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 5028 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || || || | |||||| |||| || ||| | || || || ||||| | ||| ||| Sbjct 5027 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 4968 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGT 161705 || || |||||| | ||| ||| || | ||||| ||||| || | | || | || || Sbjct 4967 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCT-TAACTGTAGCTGT 4909 Query 161706 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-TGGGGTCCTGAGGCTC 161764 || || || | |||||||||||| || |||| | ||||| || ||||| | Sbjct 4908 ATCAACACCTGCAAATAGTATGGGTCATTCA-TTGATCTTATTATGGGGACCAGAGGCAC 4850 Query 161765 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 |||| ||||| | ||| | ||| | || ||| | |||| |||||| || | || | Sbjct 4849 AAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATG 4790 Query 161825 GGGCTTTCGCTCTGATTGGATTCATGCTT-CGTCAGTTTGAACTTGCTCGTCTTATCGGT 161883 |||| || | | ||||||||| || || || || |||||| ||||||||||| | ||| Sbjct 4789 GGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 4731 Query 161884 ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTT 161943 || ||||| || ||||| ||||| || || || ||||| || || || || || || Sbjct 4730 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 4671 Query 161944 CTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCT 162003 | || |||||| | ||||| | |||||||| || || ||||| ||||| ||| Sbjct 4670 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 4611 Query 162004 ATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCAC 162063 |||||| | ||| || | ||| ||||||||||||| || ||||| |||||||| |||||| Sbjct 4610 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 4551 Query 162064 ATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACT 162123 ||||||||||| ||||| || || |||||||| | | ||||| ||||| || | ||| Sbjct 4550 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 4491 Query 162124 GTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCT 162183 || |||||||| | | | |||||||||| || ||||| ||| ||||| | Sbjct 4490 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCA 4431 Query 162184 ACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTC 162243 || ||| || || ||||| || ||||| || |||||| | ||||||||||| || || Sbjct 4430 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCACAAATTTTT 4371 Query 162244 GGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATG 162303 ||| |||||||| ||| || |||||| | |||||||| ||| | || ||||| || | Sbjct 4370 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 4311 Query 162304 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTC-GTGCTTACGA 162362 ||| | |||||||||||| | ||||| | || | || |||| ||| | || || || Sbjct 4310 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCA-TTAAACTTAAGAGCATATGA 4252 Query 162363 CTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAA 162422 |||||||||||| ||| |||||||||| || ||||| ||||||||||| ||||| || || Sbjct 4251 CTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAA 4192 Query 162423 GAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGA 162482 |||||| | || || |||||| || | ||||| |||| || || ||||| ||||| Sbjct 4191 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGA 4132 Query 162483 GAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACT 162527 || ||||||||||| ||||| ||| | || | || ||||| || Sbjct 4131 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 4087 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 160953 TTGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTA 161012 |||||| || ||| |||| | | || ||||| || ||| || |||| ||| || Sbjct 24015 TTGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGAACTACCTTA 23956 Query 161013 CTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGA 161072 || ||| | ||||| |||| || |||||||| || | | ||||||| | || Sbjct 23955 TTCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGTACAATTGA 23896 Query 161073 TCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTG 161132 |||||| || || || || | || || |||||| ||| | |||||| || | || || Sbjct 23895 TCAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTATTAACTTG 23836 Query 161133 CGTTGCTTATCCCACTTCTGAT 161154 |||||||||||| | |||||| Sbjct 23835 TGTTGCTTATCCCGCATCTGAT 23814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551328719508000