Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq315 277 3e-72 >seq315 Length=1153 Score = 277 bits (306), Expect = 3e-72 Identities = 206/237 (87%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||| | Sbjct 771 GTACAAAGGGCAGGGACGTAATCAATGCGAGCT-GATGACTCGCGTTTACTAGGAATT-C 714 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||| || | ||||||| ||||||||| ||||||||| || ||||||| Sbjct 713 CTCGTTCAAGATTAATAGTTGCAATAATCTATCCCTATCACGATGCGCATTACAAGATTA 654 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| ||| |||||| ||| |||||||||| |||||||||||||||||||||| Sbjct 653 CCCGGTCCTTCCGGACAAGGTTATAAACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGG 594 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT-GGCCTA 236 ||||| |||||||||||||||||||||||||||||||| | ||||||| | |||||| Sbjct 593 CCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCCAACTTCCTTCGGCCTA 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751826682565