Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq315 179 7e-43 seq859 152 9e-35 >seq315 Length=1153 Score = 179 bits (198), Expect = 7e-43 Identities = 116/126 (92%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| | Sbjct 1 ATAGGGATAGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATGG 60 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||| Sbjct 61 AAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGT 119 Query 313 TAGGGG 318 |||||| Sbjct 120 TAGGGG 125 >seq859 Length=748 Score = 152 bits (168), Expect = 9e-35 Identities = 128/153 (84%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 |||||||| |||||||||||||||||||||||||||| | || | |||||||||||||| Sbjct 597 CTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAGGCCCTGAATACATTAGCAT 656 Query 131 GGAATAATAGAATAGGA-CGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||||| ||| || | || | |||||||||||||||| | | || ||||||| Sbjct 657 GGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTTGCACG-CCAAGGTAATGA 715 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAA 222 |||||||||||||| |||||| | |||||||| Sbjct 716 TTAATAGGGATAGTTGGGGGTATTCGTATTCAA 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914982264768