Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq558 217 6e-54 seq442 183 1e-43 seq6522 87.8 7e-15 >seq558 Length=670 Score = 217 bits (240), Expect = 6e-54 Identities = 156/178 (88%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 509 GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGA---TTTGAGTAAGAGCATAGCTG 565 ||||||||||||||||| | |||| |||||||||| | ||||||| |||||| || Sbjct 1 GGTGCACCATCGACCGACCATGAT-TCTTCGGATGAAAGGTTTGAGTGTGAGCATTTATG 59 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct 60 TTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGCGAAGCCAGGGGAAACTCTGGT 119 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||| |||| || || |||||||||| ||||| ||||||||||||||||||| Sbjct 120 GGAGGCTCGTAGCGATTGTGACGTGCAAATCCATCGTGGAATTTGGGTATAGGGGCGA 177 >seq442 Length=752 Score = 183 bits (202), Expect = 1e-43 Identities = 139/164 (85%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||||||||||||||| |||||| |||||||| || |||| |||||||| | ||||| | Sbjct 553 TTCGACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGG 494 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| ||| Sbjct 493 CTAAATATCGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAACT 434 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||||||||||| || | |||||||| ||||||||||| Sbjct 433 TTGAAAAGAGAGTTAAAGAGTGCCTGAAATTGCTGAAAGGGAAG 390 Score = 98.7 bits (108), Expect = 4e-18 Identities = 109/148 (74%), Gaps = 17/148 (11%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 147 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATATATGCGAGTACAGGGGTGGCAAACC 88 Query 468 CGTGCGCGTAATGAAAGTGAA----------------CGGAGGTGGGAACCCGTGAGGGT 511 | | ||| ||||||||| || | ||||||||| | | ||| Sbjct 87 CCCGTGCGCAATGAAAGTAAAGGGCTGCTTCGGCGGTCTGAGGTGGGATCTGTCAAAGGT 28 Query 512 GCACCATCGACCGATCCTGATGTCTTCG 539 |||||||||||||| | |||| |||||| Sbjct 27 GCACCATCGACCGACCATGAT-TCTTCG 1 >seq6522 Length=4128 Score = 87.8 bits (96), Expect = 7e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||||||||||||||| |||||| |||||||| || |||| |||||||| | ||||| | Sbjct 244 TTCGACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGG 185 Query 94 CTAAATAT 101 |||||||| Sbjct 184 CTAAATAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079489683050