Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq221 228 2e-57 seq898 161 3e-37 >seq221 Length=825 Score = 228 bits (252), Expect = 2e-57 Identities = 254/339 (75%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 ||||| ||||||||| |||||||||||||||||||| ||| || |||||| |||| || Sbjct 362 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTATCCG 303 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 || |||||||||||||||||| ||||| |||| |||| | ||| ||||| || Sbjct 302 GATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTGTTAAATCTTGAGG 243 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194 || ||||| | |||| | | ||| |||| |||| | || || | ||||| Sbjct 242 CTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAGGGGTAGAGGGAAT 183 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254 | | ||| ||| ||||||||||||||||| | | ||||||| |||||||||||| | Sbjct 182 TTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGGCGAAGGCACTCT 123 Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314 ||||| || |||||| |||| |||||||| |||||||||| ||||||||||||| Sbjct 122 ACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCC 63 Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG 353 ||||||| ||| |||||||| ||| | |||||| Sbjct 62 CAGTAGTCCTAGCCGTAAACGATGGATACTCGATGTTGG 24 >seq898 Length=506 Score = 161 bits (178), Expect = 3e-37 Identities = 223/310 (72%), Gaps = 14/310 (5%) Strand=Plus/Plus Query 16 AGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGG 75 ||| |||||||||| |||||||||||||||||||| ||| |||| || ||||||| ||| Sbjct 204 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGG 263 Query 76 AATTACTGGGCGTAAAGCGTGCGCAGGCGG----TTGTGTAAGACAGGTGTGAAATCCCC 131 ||| ||||||||||||| || || |||| | || ||| ||| || |||| Sbjct 264 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTAGAG----GTTAAATAAAA 319 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGAC---TGCACGACTAGAGTGTGTCAGAGGGGGG 188 ||||||| | || | || | | | | | | |||| || || | | Sbjct 320 AAGCTTAACTTTT---TTCCGCTTCTAAAACGTAAATGCTTTGAGTTTGATAGGAGATAG 376 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||| ||| || || |||| || |||||||||||| ||||| |||| |||||||| Sbjct 377 CAGAATTTCACATGGAGGGGTGATATCCGTAGATATGTGAAGGAATACCAGAGGCGAAGG 436 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 | || || | || ||||||| | | | |||||||| |||||||||||||||||||| Sbjct 437 CGGCTATCTAGATCAATACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAG 496 Query 309 ATACCCTGGT 318 |||||||||| Sbjct 497 ATACCCTGGT 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289293191264