Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2663 159 5e-37 seq624 114 2e-23 >seq2663 Length=418 Score = 159 bits (176), Expect = 5e-37 Identities = 186/248 (75%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||| || ||||||||||| |||||||| |||||||| ||||| | || ||| Sbjct 332 CTTAATCTTGCAGCACCGGGCAGGTGTCAGTCCCTATACATCTTCTTAC-GAATTAGCAG 274 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||||| |||||||||||| ||| | ||||| ||| | | | || | Sbjct 273 AGACCTGTGTTTTTACTAAACAGTCGCTACCCCCGATTCTGTGCCAACTAAAAAAGATTT 214 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | || ||| ||| ||||||||||||||||| | | ||||||||||| Sbjct 213 -CTCTTTTTT-------AGT--CACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAG 164 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| |||| | ||| | | ||||||||||| |||||| | |||||||||||||| Sbjct 163 TTCCTTTACCATAATTCTTTCAAGCGCCTTAGTATACTCTACTCGTCCACCTGTGTCGGT 104 Query 241 TTACGGTA 248 || | ||| Sbjct 103 TTTCAGTA 96 >seq624 Length=1300 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | ||||| | Sbjct 1243 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTCTCT 1184 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||||||||| ||||||| | |||||||||||||| |||| Sbjct 1183 CGCGCCCCTTAGTATACTCTACCCACCTACCTGTGTCGGTTTCTGGTA 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694239957943