Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq2663 102 9e-20 seq624 91.5 2e-16 >seq2663 Length=418 Score = 102 bits (112), Expect = 9e-20 Identities = 131/180 (73%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | || || || ||||||||||||||||| |||| | ||| |||| Sbjct 102 AAACCGACACAGGTGGACGAGTAGAGTATACTAAGGCGCTTGAAAGAATTATGGTAAAGG 161 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCT---ACCCAGAAA----T 137 |||| |||||| |||| |||||||||||||| || | || || | ||||| | Sbjct 162 AACTCGGCAAAATGACTCTGTAACTTCGGGAGAAGGAGTGACTAAAAAAGAGAAATCTTT 221 Query 138 GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAAT 197 || ||| ||||| || || |||||||| ||||||||||| || ||| ||| Sbjct 222 TTTAGTTGGCACAGAATCGGGGGTAGCGACTGTTTAGTAAAAACACAGGTCTCTGCTAAT 281 >seq624 Length=1300 Score = 91.5 bits (100), Expect = 2e-16 Identities = 122/166 (73%), Gaps = 9/166 (5%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| |||| || |||||||||| || ||| ||| | | | |||| Sbjct 1142 AAACCGACACAGGTAGGTGGGTAGAGTATACTAAGGGGCGCGAGAGAA-CTCTCTCTAAG 1200 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| ||| ||| Sbjct 1201 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCT----TTAAA---AAGG 1253 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||| | ||||||| || |||||||| |||||||||||| || Sbjct 1254 TTGCAATAACCAGGTCCAAGCGACTGTTTACCAAAAACACAGGTCT 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531077571514