Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2663 147 6e-33 seq47 123 6e-26 seq624 82.4 2e-13 >seq2663 Length=418 Score = 147 bits (162), Expect = 6e-33 Identities = 232/330 (70%), Gaps = 27/330 (8%) Strand=Plus/Minus Query 99 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGC 158 |||||||||||||||||||||||| ||||||| | ||||| |||||||||||| ||| | Sbjct 418 CCCGACAAGGAATTTCGCTACCTTTGGACCGTCAGAGTTACAGCCGCCGTTTACTGGGAC 359 Query 159 TTCGATCAAGAGCTTCGCGTTAGCTAA--CCCCATCAATTAACCTTCCGGCACCGGGCAG 216 || ||| |||| ||| || || | | |||| ||| | ||||||||||| Sbjct 358 TT-----AAG---TTCGA---AGCCAAGACCTCTCCCCTTAATCTTGCAGCACCGGGCAG 310 Query 217 GCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGT 276 | |||| |||||||| || ||| || || |||||| ||||||||||| |||||||| Sbjct 309 GTGTCAGTCCCTATACATCTTCTTACGAATTAGCAGAGACCTGTGTTTTTACTAAACAGT 250 Query 277 CGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACC 336 ||| || | ||| || || || | ||| ||| | | Sbjct 249 CGC----------TACCCCCGA---TTCTGTGCCAACTAAAAAAG-ATTTCTCTTTTTTA 204 Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 | | | ||||||||||||||||| | | | ||||||| |||||||| || | |||| | Sbjct 203 GTCACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTTTACCATAATTCTTT 144 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||||| |||| |||||| | |||| Sbjct 143 CAAGCGCCTTAGTATACTCTACTCGTCCAC 114 >seq47 Length=642 Score = 123 bits (136), Expect = 6e-26 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||| ||||| |||||||||||||||| | | ||| ||||||||| | ||| Sbjct 537 CTGCATCTGCACAGATATTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCG 596 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGC 116 |||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 597 TTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGC 642 >seq624 Length=1300 Score = 82.4 bits (90), Expect = 2e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || ||||||| |||||||| ||||||||| Sbjct 1243 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTCTCT 1184 Query 397 CAAGCGCCTTGGTATTCTCTACCCA 421 | || |||| |||| ||||||||| Sbjct 1183 CGCGCCCCTTAGTATACTCTACCCA 1159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260500043072