Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2663 221 3e-55 seq624 109 1e-21 seq47 102 2e-19 >seq2663 Length=418 Score = 221 bits (244), Expect = 3e-55 Identities = 217/282 (77%), Gaps = 20/282 (7%) Strand=Plus/Minus Query 93 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 152 |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||| | Sbjct 418 CCCGACAAGGAATTTCGCTACCTTTGGACCGTCAGAGTTACAGCCGCCGTTTACTGGGAC 359 Query 153 TTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGC 212 |||||||| || | | ||| ||||||||| ||| |||||||||||||| Sbjct 358 TTAAGTTCGAAGC--CAAGACCTC-------TCCCCTTAATCTTGCAGCACCGGGCAGGT 308 Query 213 GTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272 ||||| |||||||||| |||| ||| |||||||| |||||||||||| |||||||||| Sbjct 307 GTCAGTCCCTATACATCTTCTTACGAATTAGCAGAGACCTGTGTTTTTACTAAACAGTCG 248 Query 273 CTTGGGCCTATTCTCTGCGGCCTGTCATAGA-----------CAGGCACCCCTTCTCCCT 321 || || ||||| ||| || | ||| || ||| ||||||||| Sbjct 247 CTACCCCCGATTCTGTGCCAACTAAAAAAGATTTCTCTTTTTTAGTCACTCCTTCTCCCG 188 Query 322 AAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCT 363 ||||||| | |||||||||||||||||||| || ||| |||| Sbjct 187 AAGTTACAGAGTCATTTTGCCGAGTTCCTTTACCATAATTCT 146 >seq624 Length=1300 Score = 109 bits (120), Expect = 1e-21 Identities = 96/119 (81%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACA 305 || ||||||||||||||||||||||||||||| ||| | ||| ||| | | | Sbjct 1300 GAGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTGGTTATTGCAACCTTTTTAA---A 1244 Query 306 GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||| Sbjct 1243 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTCTC 1185 >seq47 Length=642 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | ||| ||||||||| || | ||| || ||||||| | || ||||| Sbjct 539 GCATCTGCACAGATATTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCGTT 598 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGC 110 || || ||| ||| |||||||||||||||||||||||||||||| Sbjct 599 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGC 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062147244416