Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1716 174 5e-41 seq899 122 3e-25 seq955 114 4e-23 >seq1716 Length=235 Score = 174 bits (192), Expect = 5e-41 Identities = 188/249 (76%), Gaps = 14/249 (6%) Strand=Plus/Minus Query 197 TTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGC 256 ||||||||||||||||||||||||||||||||| |||||| || ||| Sbjct 235 TTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTTTTAGTTC-------TA--TTG--- 188 Query 257 ACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCAT 316 |||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 187 --TCTAGAAAGACTGCCGGTGACAAACCGGAGGAAGGTGAGGACGACGTCAAGTCATCAT 130 Query 317 GCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACC 376 |||||||| |||||||||||||| ||||||||| || |||| | || || | Sbjct 129 GCCCCTTACACCCTGGGCTACACACGTCCTACAATGGGTAAGACAATAAGTTGCAAATTC 70 Query 377 GCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGAC 436 ||||| |||| |||| ||| || || ||| | ||||| || |||||||||| | Sbjct 69 GCGAGAATAAGCTAATCTTTGAAACTTACTCCAAGTACAGATTGCAGGCTGCAACTCGCC 10 Query 437 TATATGAAG 445 | |||||| Sbjct 9 TGCATGAAG 1 >seq899 Length=203 Score = 122 bits (134), Expect = 3e-25 Identities = 148/198 (75%), Gaps = 13/198 (7%) Strand=Plus/Minus Query 169 GGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGC-AACGAGCGCAACCCT 227 || ||||||||||||||||||||||||||| |||||| ||| |||| ||| ||||| Sbjct 203 GGCTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAACTCCTTTTAACGGGCGAAACCCC 144 Query 228 TAAGCTTAGTTGCCATC---ATTAAGTTGG---GCACTCTAAGTTGACTGCCGG----TG 277 | |||||||||| ||| |||| ||||||||| |||||| | Sbjct 143 TTTTTTTAGTTGCCACTTAAATTTAGTTTTAAAGCACTCTAAAAAGACTGCTCCCTTTTT 84 Query 278 ACAAACCGGAG--GAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCT 335 || |||| ||||||||||| |||||||| || | ||| ||||||||| |||||| Sbjct 83 TTAATTTGGAGAGGAAGGTGGGGATGACGTCAAGTCCTTATGGCCCTTATGAACTGGGCT 24 Query 336 ACACACGTGCTACAATGG 353 |||||||||||||||||| Sbjct 23 ACACACGTGCTACAATGG 6 >seq955 Length=448 Score = 114 bits (126), Expect = 4e-23 Identities = 121/158 (77%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 330 TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCA 389 |||||||||||||||||||||||| || |||| | ||| | | || | | ||| Sbjct 2 TGGGCTACACACGTGCTACAATGGTAAAGACAATAAGAAGCAATAGGGCAACCTGGAGCC 61 Query 390 AATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGG 449 |||| |||| || | |||||||||||| | |||||||||| | | |||||| ||| Sbjct 62 AATCTT-TAAACTTTACCAAAGTTCGGATTGTGGACTGCAACTCGTCCACATGAAGGTGG 120 Query 450 AATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 |||| |||||||||| | ||||||||| | |||||||| Sbjct 121 AATCACTAGTAATCGCACATCAGCATGTTGCGGTGAAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503642183360