Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq315 275 1e-71 >seq315 Length=1153 Score = 275 bits (304), Expect = 1e-71 Identities = 211/248 (85%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 613 TCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCC 554 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA---GCCA--CCAACCAT 130 ||||||| | ||| ||| | ||||||||||||||| | || | | || ||| Sbjct 553 CAACTTCCTTCGGCCTAGCGCCGAAAGTCCCTCTAAGAAGTCTCTGGCAATGCTAAGCAT 494 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | |||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 493 TCCCAGTA---CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAA 437 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 436 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTC 377 Query 251 AATCTGTC 258 |||||||| Sbjct 376 AATCTGTC 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796616357271