Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq221 214 4e-53 >seq221 Length=825 Score = 214 bits (236), Expect = 4e-53 Identities = 242/317 (76%), Gaps = 13/317 (4%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| |||| || |||||||||||||||||| || ||||| |||||||||||| Sbjct 434 CACGCGGTATTG-CTCTGTCAGGCTTTCGCCCATTGCAGAAAATTCCTCACTGCTGCCTC 492 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | Sbjct 493 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCT 552 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAG--GCT 205 || ||||||||||||||| ||| ||||| ||||||||||||||| | | | || || Sbjct 553 ACTGATCGTCGCCTTGGTAGGCCTTTACCCTACCAACTAGCTAATCAGCCGCGAGCTTCT 612 Query 206 CATCTGATAG-CGCAAGGC------CCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATG 258 | || | || | || | | | ||| ||| |||| ||| || | |||| Sbjct 613 CTTCAGGCAGAGGTGAGTCAGTATTACTTATCTCCTCTG-TTTCACCC-AGGGGCATATG 670 Query 259 CGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTA 318 ||| |||||| |||||| ||||||||||| | |||| |||| | | ||| Sbjct 671 GGGTTTTAGCGAATGTTTCCATCCGTTATCCCCCTCCTAAAGGCGAATTCTCACGTGTTA 730 Query 319 CTCACCCGTCCGCCGCT 335 |||||||||||||| || Sbjct 731 CTCACCCGTCCGCCACT 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071744960480