Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq624 174 6e-41 seq83 118 4e-24 seq420 104 8e-20 >seq624 Length=1300 Score = 174 bits (192), Expect = 6e-41 Identities = 274/383 (72%), Gaps = 21/383 (5%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| |||||| ||||||||||||||||||||| | | || ||||||| ||||| Sbjct 367 CGCTGCGCCTAAACACATTTCGGGGAGAACCAGCTAGCTCCGGATTCGATTGGCATTTCA 308 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| || | |||||||| | ||| |||||| ||||||| | Sbjct 307 CCCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCAGTTCGGACCTCCACTTAG 248 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGA--TCGT 313 | ||||| |||||| |||| |||||| ||||||| | ||||||||| | | | Sbjct 247 TTTTACCTAAGCTTCATCCTGGCCATGGTTAGATCATCCGGGTTCGGGTCTGTACCTAAT 188 Query 314 GCCACTCATACGC-CCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACC 372 | || ||||| | | || ||||||||| ||| |||| | | | |||||| Sbjct 187 GACA---TTACGCTCGTTATCAAGCTCGCTTTCACTATGGCT-TCGTATTC---TTAACC 135 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA--CCTGGTA 430 || | | | || |||| |||||||||||||| |||||||| |||| | || | Sbjct 134 CAGCCATTAGATAC-AAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGGCTTGACA 76 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 || | || |||| ||| | |||||||| |||||||| | || ||||||| Sbjct 75 ACTCGTA-GCCCTTCTGCT------GCTTGTAGGCTTTTGGTTTCATGGTCT-TTTCACT 24 Query 491 CCCCGCCAGGGGTACTTTTCACC 513 |||| || ||||| ||||||||| Sbjct 23 CCCCTCCCGGGGTTCTTTTCACC 1 >seq83 Length=1542 Score = 118 bits (130), Expect = 4e-24 Identities = 128/169 (76%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| |||||| ||| |||||||||| | |||||||||| |||||||||||||| Sbjct 576 ACTTAAATAGATTTCGCGGAAAACCAGCTATATCTAAGTTTGATTAGCCTTTCACCCCTA 635 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||||| ||||||| | | |||||| || | ||||||||||||| | | || | Sbjct 636 ACCACAAATCATCCCAGTATTCTTCAACATACACGAGTTCGGTCCTCCAATTGATGTTTC 695 Query 262 CCGC---GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 | | ||||||||| ||||| |||||||||| | ||||||| || Sbjct 696 CATCAAATTTTCAACCTGTTCATGGTTAGATCACTTAGTTTCGGGTTTT 744 >seq420 Length=810 Score = 104 bits (114), Expect = 8e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTA 559 |||| ||||||||||||||||||||||||| || | ||||||||||| |||| |||||| Sbjct 1 GGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTCAGGAATATTTA 60 Query 560 GGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | ||| |||||||| | |||||||||| ||||||| Sbjct 61 GCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817167574784