Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq420 123 6e-26 seq624 114 3e-23 seq83 73.4 1e-10 >seq420 Length=810 Score = 123 bits (136), Expect = 6e-26 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||||| |||||||||||||||||| ||||||||||||||| |||| | |||||| Sbjct 1 GGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTCAGGAATATTTA 60 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||| | | |||||| | ||||| || | |||| |||||||| | ||||||| Sbjct 61 GCCTTGCAAGGTGGTCCTTGCGGATTCACACGGAATTTCACGTGCTCCATGCTACTCG 118 >seq624 Length=1300 Score = 114 bits (126), Expect = 3e-23 Identities = 228/315 (72%), Gaps = 22/315 (7%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| |||| |||||| |||||| ||||| || Sbjct 300 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT-TT 244 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || |||| |||| || |||||| |||| || ||||||| | || | Sbjct 243 ACCTAAGCTT-CATCCTGGCCAT-GGTTAGATCATCCGGGTT-CGGGTCTGTA-CCTAAT 188 Query 129 GACTAGACGCCC--TAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT 186 ||| |||| | || ||| |||||||| | ||| | || | ||||| |||| | Sbjct 187 GACATTACGCTCGTTATCAAG-CTCGCTTT-CACTATGGCTTCG-TATTC--TTAACCCA 133 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAA 244 |||| | | | ||||||| | | |||| | ||| ||| ||||||||| | |||| Sbjct 132 -GCCATTAGATACAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGGCTTGACAAC 74 Query 245 --GTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 || | | | | ||||||||| || | ||||||| | ||| ||||||||||||| || Sbjct 73 TCGTAGCCCTTCTGCTGCTTGTAGGCTTTTGGTTTCATGGTCT-TTTCACTCCCCTC-CC 16 Query 302 GGGGTTCTTTTCGCC 316 |||||||||||| || Sbjct 15 GGGGTTCTTTTCACC 1 >seq83 Length=1542 Score = 73.4 bits (80), Expect = 1e-10 Identities = 153/220 (70%), Gaps = 16/220 (7%) Strand=Plus/Plus Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 |||||||| || | | || || || |||||||||||| |||||||||||| |||| | Sbjct 791 TTAAGCTT-GCTTGTAAGAAAAACTCACTGACCCATTATGCAAAAGGTACGCCGTCA--C 847 Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 | ||| ||||| |||||| || ||| ||| | | || ||||| ||| Sbjct 848 TATAAA---AGCTCCGACTGCTATTAAACATTGAATTTTA--AACT-TTTCA-----CTC 896 Query 299 TCCGGGGTTC-TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAG-TAG 356 || |||| ||||| |||||||||||||||||| ||| |||||| | || || Sbjct 897 TCGAAAGTTCTTTTTCACCTTTCCCTCACGGTACTTGTTTGCTATCGATTTTCAAGACAG 956 Query 357 TATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAA 396 ||||| || |||| ||| |||| | |||| ||||| Sbjct 957 ACTTTAGATTTTGAGGGTGGGACCCCATTCTTCAAACAAA 996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241304610944