Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq221 187 5e-45 seq898 104 5e-20 >seq221 Length=825 Score = 187 bits (206), Expect = 5e-45 Identities = 228/306 (75%), Gaps = 19/306 (6%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| || || || |||||||||||||||||||||||||| ||| Sbjct 451 TCAGGCTTTCGCCCATTGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCG 510 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||| ||| |||||| | || |||||||| || ||||| |||||||| |||||| Sbjct 511 TGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 570 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192 ||| ||| | |||||||| |||||| ||||||||| || ||||| | | | Sbjct 571 AGGCCTTTACCCTACCAACTAGCTAATCAGCCGCGAGCTTCTC-TTCAGGCAGA---GGT 626 Query 193 TGGTCAAAGAATGA-TGCCATCCTCTG----AC-------ATTATGCGGTATTAGCGTTC 240 ||| || || | | ||||||| || |||| ||| |||||| Sbjct 627 GAGTC--AGTATTACTTATCTCCTCTGTTTCACCCAGGGGCATATGGGGTTTTAGCGAAT 684 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| |||||| || ||| |||||| | | |||||||||||||||||||||||| Sbjct 685 GTTTCCATCCGTTATCCCCCTCCTAAAGGC-GAATTCTCACGTGTTACTCACCCGTCCGC 743 Query 301 CACTAA 306 |||||| Sbjct 744 CACTAA 749 >seq898 Length=506 Score = 104 bits (114), Expect = 5e-20 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || || |||||||| |||| | || || Sbjct 125 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCTCACTGCTGGCTCCAAATGAAGCCT 66 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| |||||| || ||||||||||| | |||| |||| | || Sbjct 65 GGGCCTTGTCTCAGTCCCAGTGTGGCTGTACAACCTCTCAGAACAGCTAAGGATCATAGG 6 Query 127 CTTGG 131 ||||| Sbjct 5 CTTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998162470656