Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq624 226 7e-57 >seq624 Length=1300 Score = 226 bits (250), Expect = 7e-57 Identities = 301/407 (74%), Gaps = 11/407 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| || |||| |||| || ||| | | | | Sbjct 915 CGACTACGCCTCTCGGCCTCGCCTTAGGTCCTGACTAACCCTTCGCGGACGAGCCTTCCG 856 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | | |||| | | |||||| |||| | ||||||||| ||| Sbjct 855 AAGGAATCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGCTACTCAAGCCG 796 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC--ACTGACAC 177 |||||||||| | |||| | | | || | | | |||||| |||| || Sbjct 795 ACATTCTCACTTCTGTTTCGTCCAACTC-CGCTCTCGCTAAATCTTCACTCTACTG-CAG 738 Query 178 GACGCTCCCCTACCCA--AC-CACACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | || | | || | | |||| |||||||| ||| ||||| | | Sbjct 737 AACGCTCCCCTACCGATAACTCTTAAAGCTATCCCACGGCTTCGGCAGATGACTTA-GTC 679 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 |||||| ||| ||||||| || || ||||||||||||||||||||||||||||||| Sbjct 678 CCGCTA-ATTTTCGGCGCAAGATTGCTCGACCAGTGAGCTATTACGCACTCTTTCAAGGG 620 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 | |||||||| |||| |||||||||||||| | || |||| |||||| |||| || Sbjct 619 TTGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCCTTCCCACTTCCTTTGTCACTTAG 560 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || || ||||||||||| | || |||||||||||||||||||| Sbjct 559 CCATCATTTTGGGGCCTTAGCCGGTGGTCTGGGCTGTTTCCCTCTCG 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177319837184