Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1716 100 2e-19 seq899 91.5 1e-16 >seq1716 Length=235 Score = 100 bits (110), Expect = 2e-19 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| | ||| || | |||| |||||||| |||||| Sbjct 12 CGAGTTGCAGCCTGCAATCTGTACTTGGAGTAAGTTTCAAAGATTAGCTTATTCTCGCGA 71 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || | ||| | |||||||| |||||||| ||||| |||||| ||| Sbjct 72 ATTTGCAACTTATTGTCTTACCCATTGTAGGACGTGTGTAGCCCAGGGTGTAAGGGGCAT 131 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||| ||| ||||||||||||||||||||| Sbjct 132 GATGACTTGACGTCGTCCTCACCTTCCTCCGGTTTGTCAC 171 >seq899 Length=203 Score = 91.5 bits (100), Expect = 1e-16 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 81 TACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCC 140 |||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||| Sbjct 4 TACCATTGTAGCACGTGTGTAGCCCAGTTCATAAGGGCCATAAGGACTTGACGTCATCCC 63 Query 141 CACCTTCCTC 150 |||||||||| Sbjct 64 CACCTTCCTC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415904122270