Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq221 150 3e-34 seq898 127 3e-27 >seq221 Length=825 Score = 150 bits (166), Expect = 3e-34 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | |||| | |||||||||| ||||||| | Sbjct 90 GCTTTCGTCTCTGAGTGTCAGTAATAGCCCAGTAGAGTGCCTTCGCCATCGGTGTTCTTT 149 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||| ||| | |||||| | || || | ||||||| Sbjct 150 CCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTCTACCCCTACTATACTCAAG 209 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||||| | ||||||||| || ||| ||| ||||| Sbjct 210 TCTCCTAGTTTCTACTGCAGATTTGAGGTTGAGCCTCAAGATTTAACAGTAGACTTAAGA 269 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || ||| || | |||||| |||| |||||||||||||| ||||| || ||| ||| Sbjct 270 AACCACCTGCAGACGCTTTACGCCCAGTAAATCCGGATAACACTTGCATCCCCCGTCTTA 329 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||||||| ||||||||| |||| Sbjct 330 CCGCGGCTGCTGGCACGGAGTTAGCCGATGCTT 362 >seq898 Length=506 Score = 127 bits (140), Expect = 3e-27 Identities = 201/281 (72%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTG-TCCAGCAATCCGCCTTCGCCACTGGTG 59 |||| ||||||| ||||| ||||||| | || || || | ||||||||||| ||||| Sbjct 480 CCCATGCTTTCGTCCCTCAACGTCAGT-ATTGATCTAGATAGCCGCCTTCGCCTCTGGTA 422 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCG--ATTGCCTCTCCAG 117 ||||| | ||||||||| || ||||| || || | ||||| | || ||| || | Sbjct 421 TTCCTTCACATATCTACGGATATCACCCCTCCATGTGAAATTCTGCTATCTCCTATCAA- 363 Query 118 CACTCAAGAAAAACA-GTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCT 176 |||||| | | |||| | | || || | ||| ||| | ||| || ||| Sbjct 362 -ACTCAAAGCATTTACGTTTTAGAAGC-GGAAAAAAGTTAAGCTTTTTTATTTAACCTCT 305 Query 177 GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACC 236 || | | |||||| |||||||| |||| | | ||||||||||||| ||| || Sbjct 304 AACAAAAAATGCTGCCTACGGACCCTTTACGCCCAGTCATTCCGGATAACGCTCGCCCCC 245 Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCT 277 | ||| |||||||||||||||||||| ||||||||| |||| Sbjct 244 TTCGTCTTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCT 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828608982061