Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq47 105 5e-21 seq791 87.8 1e-15 >seq47 Length=642 Score = 105 bits (116), Expect = 5e-21 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| ||||||||||| | ||||| || | |||||||||||||||| | Sbjct 178 TACCTTTTATCCATTGAGCGATGGTCTTTCCACACAGAACCACCGGATCACTATGTTCAA 237 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||||||| | |||| ||| ||| ||||||| ||| ||||||| |||| Sbjct 238 CTTTCGTTTCTGCTCGATTTGTCAATCTTGCAGTCAAGCAGGCTTATGCCATTACACT 295 >seq791 Length=470 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | || ||||| ||| | |||||||||| |||| Sbjct 36 TAACTTTTATCCGTTGAGCGACGACCTTTCCACTCAGGATCGTCGGATCACTAAGACCGA 95 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | |||| ||||||| |||||| |||||||| || |||| Sbjct 96 CTTTCGTCTCTGCTTGACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACT 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351921489700