Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq859 127 2e-27 seq315 78.8 1e-12 >seq859 Length=748 Score = 127 bits (140), Expect = 2e-27 Identities = 124/156 (79%), Gaps = 8/156 (5%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 |||||||| |||||||||||||| ||||||||||||| | || | |||||||||| ||| Sbjct 597 CTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAGGCCCTGAATACATTAGCAT 656 Query 70 GGAATAATAGAATAGGA-CGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CGTAA 126 ||||||||| ||| || | || | |||||||||| ||||| | |||| |||| Sbjct 657 GGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTT----GCACGCCAAGGTAA 712 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAA 162 |||| |||| ||||||| |||||| | |||||||| Sbjct 713 TGATTAATAGGGATAGTTGGGGGTATTCGTATTCAA 748 >seq315 Length=1153 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||||||| |||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 1 ATAGGGATAGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511881996640