Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq47 104 2e-20 seq791 75.2 1e-11 >seq47 Length=642 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||| | ||||| ||||||||||||||||||||| | |||||| |||| Sbjct 191 TTGAGCGATGGTCTTTCCACACAGAACCACCGGATCACTATGTTCAACTTTCGTTTCTGC 250 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| |||| ||| |||||||||| |||||||||||| |||| Sbjct 251 TCGATTTGTCAATCTTGCAGTCAAGCAGGCTTATGCCATTACACT 295 >seq791 Length=470 Score = 75.2 bits (82), Expect = 1e-11 Identities = 110/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| | || ||||| |||| | | |||||||||| |||| |||||| ||| Sbjct 48 GTTGAGCGACGACCTTTCCACTCAGGATCGTCGGATCACTAAGACCGACTTTCGTCTCTG 107 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 || || || |||||||||||||| ||| |||| || |||| | |||| || Sbjct 108 CTTGACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACTCTTCGATCGATTTC 167 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| | || ||||| |||| ||||||||| Sbjct 168 TATCCGATCTGAGGAAACCTTTGTGCGCCTCCGTTA 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473490846892