Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq33 161 2e-37 seq47 138 2e-30 seq112 96.9 5e-18 >seq33 Length=503 Score = 161 bits (178), Expect = 2e-37 Identities = 153/194 (79%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| |||||| ||||| || ||||| ||||| Sbjct 310 GAGGTTGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCATTCCATACATAGCTACCCAG 369 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| ||| || ||| ||||| || ||||||||||||| Sbjct 370 CGTTTACCGTTGGCACGATAACTGGTACACTAGCGGTATGTCCTTCTCGGTCCTCTCGTA 429 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || | ||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 430 CTAGAGAAGGATCCTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 489 Query 181 CGACGTTCTGAACC 194 |||||||||||||| Sbjct 490 CGACGTTCTGAACC 503 >seq47 Length=642 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||||||||||||||||| ||||||||| |||||||||| ||| || | || | ||| Sbjct 1 GATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCACCTTCCTCGGC 60 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||||||||| ||| ||||||| |||||||| || |||||||||||| Sbjct 61 GAACAGCCGAACCCTTGGAACCACCTTCAGCTCCAGGATGTGATGAGCCGACATCG 116 >seq112 Length=738 Score = 96.9 bits (106), Expect = 5e-18 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 ||||| |||| |||||| ||||| | ||| |||||| || || |||| ||| | Sbjct 565 GCTTATATGCTTTCAGCAATTATCTAATATAAATGTAGCTTTCCGGCCATGCCTTTGATA 624 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC--AGCTC 133 ||||| ||| |||| | ||| |||||||||||||||||||||| | || | Sbjct 625 AGACAACCGGTCTACCATGGATTTACTTTTCCCGGTCCTCTCGTACTAAGGTCTAAGTT- 683 Query 134 CTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCT 189 ||||| |||| |||| || |||||||||||||||||||| ||||||||| Sbjct 684 -TCTCAGTTTTCTGGCGCCTACAGTAGATAGGGACCGAACTGTCTCACGACGTTCT 738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780620044876