Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq221 232 2e-58 seq898 125 2e-26 >seq221 Length=825 Score = 232 bits (256), Expect = 2e-58 Identities = 308/425 (72%), Gaps = 31/425 (7%) Strand=Plus/Plus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| | | | | |||| || ||||||| || ||| |||||||| ||||||| Sbjct 407 TTTACAACTCAGTAAGTCTTCATCCCTCACGCGGTATTGCTCTGTCAGGCTTTCGCCCAT 466 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 TGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 526 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| || ||||||||||||||||| ||||||||||| ||| |||| |||||| || Sbjct 527 TGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACCCTACC 586 Query 184 AACTAGCTAATCCCATCTGGGTTCATC-CGATAGTGAGAGGCCCGAAGGT---------- 232 ||||||||||| || | | | | || | || ||||| | || Sbjct 587 AACTAGCTAAT--CAGCCGCGAGCTTCTCTTCAGGCAGAGGTGAGTCAGTATTACTTATC 644 Query 233 CCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292 || || ||| | | | | |||| ||| ||||| | ||||||| ||||||||| Sbjct 645 TCCTCTGTTTCACCCAGGGGC-ATATGGGGTTTTAGCGAATGTTTCCATCCGTTATCCCC 703 Query 293 CTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT---CGTCAGCGAAGCA 349 |||| |||| ||| || |||||||||||||||||||| | | |||||| Sbjct 704 CTCCTAAAGGCGAATTCTCACGTGTTACTCACCCGTCCGCCACTAAAATTAACCGAAGC- 762 Query 350 GCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAT 409 || || ||||||||||||||||||| |||| | ||||||||||||| Sbjct 763 -TAA-----------TTTCCGTTCGACTTGCATGTGTAAGGCATACCGCCAGCGTTCATC 810 Query 410 CTGAG 414 ||||| Sbjct 811 CTGAG 815 >seq898 Length=506 Score = 125 bits (138), Expect = 2e-26 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||| ||| |||||| ||| || | | || |||| |||| |||| ||| |||| Sbjct 162 TTTACAACTTGAAAGCCTTCATCACTCATGTAGTATTGCTGGATCAAGCTTTCGCTCATT 103 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| ||||| |||||||| |||| | || |||| || ||||||||| ||||||| Sbjct 102 GTCCAAAATTCCTCACTGCTGGCTCCAAATGAAGCCTGGGCCTTGTCTCAGTCCCAGTGT 43 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 ||||| || ||||||||| |||||| ||||| Sbjct 42 GGCTGTACAACCTCTCAGAACAGCTAAGGATC 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222109178816