Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq221 351 3e-94 seq898 237 5e-60 >seq221 Length=825 Score = 351 bits (388), Expect = 3e-94 Identities = 289/346 (84%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||| | Sbjct 605 CGCGGCTGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGCGACGATCAGTAGCTGGT 546 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 545 CTGAGAGGACGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 486 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || |||||||| ||||||||| ||||| ||||||||| ||||| Sbjct 485 CAGTGAGGAATTTTCTGCAATGGGCGAAAGCCTGACAGAGCAATACCGCGTGAGGGATGA 426 Query 340 AGGCCTTC-GGGTCGTAAAGCTCTGT-CCTCAAGGAAGATAA--TGACGGTACTTGAGGA 395 || | | | | || ||||| ||| || ||| |||||||| | ||||||||||| ||| Sbjct 425 AGACTTACTGAGTTGTAAACCTCGGTACCTTAAGGAAGAAGATCTGACGGTACTTAAGGT 366 Query 396 GG-AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 || |||| ||||||||| |||||||||||||||||||| ||| || || || ||||| Sbjct 365 GGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCAAGTGTTAT 306 Query 455 CCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||||| |||||||||| || | ||||||||||||||||| Sbjct 305 CCGGATTTACT-GGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTC 261 >seq898 Length=506 Score = 237 bits (262), Expect = 5e-60 Identities = 228/291 (78%), Gaps = 1/291 (0%) Strand=Plus/Plus Query 196 CCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACAC 255 ||||| | | |||| |||| | |||||||| || | |||||| ||| ||||||||| Sbjct 1 CCAAGCCTATGATCCTTAGCTGTTCTGAGAGGTTGTACAGCCACACTGGGACTGAGACAA 60 Query 256 GGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGAT 315 || ||| || | |||| |||||||| ||||| ||| |||||| || ||||| |||| Sbjct 61 GGCCCAGGCTTCATTTGGAGCCAGCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGAT 120 Query 316 GCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG 375 |||||| | | |||| ||||||||| ||| || ||||| |||| | | |||| | Sbjct 121 CCAGCAATACTACATGAGTGATGAAGGCTTTCAAGTTGTAAAACTCTTTGGTTGAGGAGG 180 Query 376 ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATA 435 |||||||| ||||| | | |||||||||||||| |||||||||||||||||||| | Sbjct 181 ATAATGACAGTACTCAACAAAATAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGA 240 Query 436 CGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGG 486 || ||||||| ||||||||||||||| ||| ||||||||||||| |||||| Sbjct 241 CGAAGGGGGCGAGCGTTATCCGGAATGACT-GGGCGTAAAGGGTCCGTAGG 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497243705984