Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq221 266 8e-69 seq898 203 8e-50 >seq221 Length=825 Score = 266 bits (294), Expect = 8e-69 Identities = 271/352 (77%), Gaps = 1/352 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAA-GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59 ||||| ||| |||| || ||||||||| |||||||||||||||||||| ||| || | Sbjct 375 TACTTAAGGTGGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATG 316 Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG 119 | || |||||||||| ||||||||||||||| || | ||||||||||||||||| | Sbjct 315 CAAGTGTTATCCGGATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTG 256 Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG 179 | ||| | ||||||||| | |||| | |||||| | || |||| || || Sbjct 255 TTAAATCTTGAGGCTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAG 196 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | |||||| | |||| |||||||||||||||||||||| | | ||||||| || Sbjct 195 GGGTAGAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATG 136 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||| | |||| || | ||||||||| || ||||||| |||||||||| Sbjct 135 GCGAAGGCACTCTACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATG 76 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGG 351 ||||||||||||| ||||||| ||||||||||||| ||||| | ||| || Sbjct 75 GGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTCGATGTTGG 24 >seq898 Length=506 Score = 203 bits (224), Expect = 8e-50 Identities = 229/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 |||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| Sbjct 204 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGG 263 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGC 133 ||| |||||||||||||||| |||||| | | || || |||||| ||| | || Sbjct 264 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTAGAGGTTAAATAAAAAAGC 323 Query 134 TCAACCCCGGGACTGCTTTTGAAAC-TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 | || | | |||| | |||| | | | | |||| ||| | || |||| Sbjct 324 TTAA-CTTTTTTCCGCTTCTAAAACGTAAATGCTTTGAGTTTGATAGGAGATAGCAGAAT 382 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | || || ||||| || ||||||||| | ||||| ||||| ||||||||||||| Sbjct 383 TTCACATGGAGGGGTGATATCCGTAGATATGTGAAGGAATACCAGAGGCGAAGGCGGCTA 442 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 || || |||||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 443 TCTAGATCAATACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAGATACCC 502 Query 313 TGGT 316 |||| Sbjct 503 TGGT 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202913746688