Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016-
04-08] 23,791 sequences; 33,508,916 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq221 266 8e-69
seq898 203 8e-50
>seq221
Length=825
Score = 266 bits (294), Expect = 8e-69
Identities = 271/352 (77%), Gaps = 1/352 (0%)
Strand=Plus/Minus
Query 1 TACTTGAGGAGGAA-GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59
||||| ||| |||| || ||||||||| |||||||||||||||||||| ||| || |
Sbjct 375 TACTTAAGGTGGAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGATG 316
Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG 119
| || |||||||||| ||||||||||||||| || | ||||||||||||||||| |
Sbjct 315 CAAGTGTTATCCGGATTTACTGGGCGTAAAGCGTCTGCAGGTGGTTTCTTAAGTCTACTG 256
Query 120 TGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG 179
| ||| | ||||||||| | |||| | |||||| | || |||| || ||
Sbjct 255 TTAAATCTTGAGGCTCAACCTCAAATCTGCAGTAGAAACTAGGAGACTTGAGTATAGTAG 196
Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239
||| | |||||| | |||| |||||||||||||||||||||| | | ||||||| ||
Sbjct 195 GGGTAGAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATG 136
Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299
|||||||| | |||| || | ||||||||| || ||||||| ||||||||||
Sbjct 135 GCGAAGGCACTCTACTGGGCTATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAATG 76
Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGG 351
||||||||||||| ||||||| ||||||||||||| ||||| | ||| ||
Sbjct 75 GGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTCGATGTTGG 24
>seq898
Length=506
Score = 203 bits (224), Expect = 8e-50
Identities = 229/304 (75%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73
|||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 204 AGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGAAGGGGGCGAGCGTTATCCGG 263
Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGC 133
||| |||||||||||||||| |||||| | | || || |||||| ||| | ||
Sbjct 264 AATGACTGGGCGTAAAGGGTCCGTAGGCAGCATTTTTTGTTAGAGGTTAAATAAAAAAGC 323
Query 134 TCAACCCCGGGACTGCTTTTGAAAC-TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192
| || | | |||| | |||| | | | | |||| ||| | || ||||
Sbjct 324 TTAA-CTTTTTTCCGCTTCTAAAACGTAAATGCTTTGAGTTTGATAGGAGATAGCAGAAT 382
Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252
| | || || ||||| || ||||||||| | ||||| ||||| |||||||||||||
Sbjct 383 TTCACATGGAGGGGTGATATCCGTAGATATGTGAAGGAATACCAGAGGCGAAGGCGGCTA 442
Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312
|| || |||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 443 TCTAGATCAATACTGACGTTGAGGGACGAAAGCATGGGGAGCAAACAGGATTAGATACCC 502
Query 313 TGGT 316
||||
Sbjct 503 TGGT 506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202913746688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |