Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq315 288 2e-75 >seq315 Length=1153 Score = 288 bits (318), Expect = 2e-75 Identities = 220/258 (85%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAG-CCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||| ||||| | || |||| ||||||| | |||||||||||||||||| Sbjct 514 CTTCTTAGAGGGACTTTCGGCGCTAGGCCGAAGGAAGTTGGGGGCAATAACAGGTCTGTG 573 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| ||||||||| || | Sbjct 574 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTTTATAA 633 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| |||||||| | |||||||||||| | | | ||||| | |||||||| |||| Sbjct 634 CCTTGTCCGGAAGGACCGGGTAATCTTGTAATGCGC-ATCGTGATAGGGATAGATTATTG 692 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| |||| |||||||||| |||||||| |||| ||||||||| ||| |||||| Sbjct 693 CAACTATTAATCTTGAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCATTGATT 752 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 753 ACGTCCCTGCCCTTTGTA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946974651648