Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq624 233 6e-59 seq83 125 2e-26 >seq624 Length=1300 Score = 233 bits (258), Expect = 6e-59 Identities = 388/548 (71%), Gaps = 33/548 (6%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||| || ||||||| ||||||||||||||||| | ||||| || |||| Sbjct 197 AGACCCGAACCCGGATGATCTAACCATGGCCAGGATGAAGCTTAGGTAAAACTAAGTGGA 256 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||| ||| |||||||||||| || ||||||| ||||| ||||||||||| || Sbjct 257 GGTCCGAACTGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 316 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG--GTAGTGCCTCAAGTA 211 || | || ||| |||||||||||| |||||| | ||||| | || | | | | Sbjct 317 AATCGAATCCGGAGCTAGCTGGTTCTCCCCGAAATGTGTTTAGGCGCAGCGGTTGACAGA 376 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGG--GGTCATTGCGACTTACCAAACCA 269 || | |||||| ||||||||| || ||| ||| ||| || |||||| | Sbjct 377 AAAC--TTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGGTAATTCGGA---ACCAAATCG 431 Query 270 TTGCAAACTCCGAA-------TGCGCATCAGTT-TTACCGCGG-------GAGTGAGGGC 314 |||||||| ||| ||| | || ||| | | || ||| || Sbjct 432 AGGCAAACTCTGAATACTAAGTGCCCCTCCGTTAGGAGGGAGGCGTCAACTAGTAAGACT 491 Query 315 ATGGGTGCTAAGGTCC-GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCG 373 |||| | |||| ||| ||| ||||||| || | || ||| | | ||||||||||| Sbjct 492 CTGGGGGATAAGCTCCAGTG-TCGAGAGGGAAACAGCCCAGACCACCGGCTAAGGCCCCA 550 Query 374 AAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTT 433 |||||| ||||||| || || ||||| || ||| | ||| | |||| ||| |||| Sbjct 551 AAATGATGGCTAAGT--GACAAAGGAAGTGGGAAGGCTGAAACAACCAGGAGGTTTGCTT 608 Query 434 GGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGG 493 ||||||| || | || ||||||||||||| |||||||| |||||| | || ||| | Sbjct 609 AGAAGCAG-CAACCCTTGAAAGAGTGCGTAATAGCTCACTGGTCGAGCAATCTTGCGCCG 667 Query 494 ATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT--CATTTATA-TGATCGGT 550 | ||| | |||| | ||||| ||| ||||||| ||||||| | || | | | |||||| Sbjct 668 AAAATTAGCGGG-ACTAAGTCATCTGCCGAAGCCGTGGGATAGCTTTAAGAGTTATCGGT 726 Query 551 AGGGGAGC 558 |||||||| Sbjct 727 AGGGGAGC 734 >seq83 Length=1542 Score = 125 bits (138), Expect = 2e-26 Identities = 129/168 (77%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGT---AACACGCCCTGG 92 ||||||||| |||||||||| ||||| |||| |||| | | | |||| ||| Sbjct 741 ACCCGAAACTAAGTGATCTAACCATGAACAGGTTGAAAATTTGATGGAAACATCAATTGG 682 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||| | |||||||| ||| ||||||| ||||| |||||||||||||| Sbjct 681 AGGACCGAACTCGTGTATGTTGAAGAATACTGGGATGATTTGTGGTTAGGGGTGAAAGGC 622 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||| ||||||| || |||||||||| || ||||| ||||||| |||| Sbjct 621 TAATCAAACTTAGATATAGCTGGTTTTCCGCGAAATCTATTTAAGTAG 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689198027264