Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq420 125 1e-26 >seq420 Length=810 Score = 125 bits (138), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 9/237 (4%) Strand=Plus/Minus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 ||| |||| ||||||| | | | ||||||||||||| | | |||||| ||| ||| Sbjct 530 TGGGGGATACCTTGGCATTCAGAAGCGATGAAGGACGCGATGACCGGCGATACGCTCCGG 471 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | ||||| | |||||||||| || |||||||||| || ||| | | | | Sbjct 470 GGAGCGGGCAAAAAG-CTTTGATCCGGAGGTTTCCGAATGAGGCAACTC----CATAGA- 417 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | | ||||||||| | | | || ||||||| || |||||||||||||| || Sbjct 416 --ACTTCTTCCCGAATACATAAGGAAGAAAGAGCGAACCTGGGGAACTGAAACATCTTAG 359 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 || | ||||||| ||| || ||||||| ||||| |||||||||| ||||| Sbjct 358 TACCCAGAGGAAAAAAAAGTAAAAACGATTCCCTTAGTAGCGGCGAGCGAACTGGGA 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918181503456