Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq791 131 6e-28 seq47 113 2e-22 seq2663 84.2 7e-14 >seq791 Length=470 Score = 131 bits (144), Expect = 6e-28 Identities = 122/154 (79%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||| |||||||||||||||| |||| ||| |||||||| | |||| | | Sbjct 111 GACTTGTACGTCTCGCAGTCAAGCTTCCTTTTGCCTTTACACTCTTCGATCGATTTCTAT 170 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 || |||||| |||||||| ||||||||||||| |||| ||| ||| ||||||||||| Sbjct 171 CCGATCTGAGGAAACCTTTGTGCGCCTCCGTTACCTTTTAGGA-GGCGACCGCCCCAGTC 229 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGAT 156 ||||| |||||| || | ||||| | ||| ||| Sbjct 230 AAACTGCCCACCTGGGAGTGTCCTCTCCCCGGAT 263 >seq47 Length=642 Score = 113 bits (124), Expect = 2e-22 Identities = 115/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 287 ATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTA 345 ||||| ||||| | |||||||| |||| || | | || |||||| || || Sbjct 494 ATAGTAAAGGTGCATAGGGTCTTTCCGTCTAGCTGTAGGTAATCTGCATCTGCACAGATA 553 Query 346 CTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAG 405 | ||||||||| | | |||| |||||||| ||| ||||||||| |||||| ||||| Sbjct 554 TTTCAATTTCACTGAATTTATGGTAGAGACAGCGGGGAAGTCGTTACACCATTCATGCAG 613 Query 406 GTCGGAACTTACCCGACAAGGAATTTCGC 434 ||||||||||||||||||||||||||||| Sbjct 614 GTCGGAACTTACCCGACAAGGAATTTCGC 642 >seq2663 Length=418 Score = 84.2 bits (92), Expect = 7e-14 Identities = 106/147 (72%), Gaps = 19/147 (13%) Strand=Plus/Minus Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||| ||| || | |||||| ||||||||||||||| | Sbjct 418 CCCGACAAGGAATTTCGCTACCTTTGGACCGTCAGAGTTACAGCCGCCGTTTACTGGGAC 359 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 || | || || | ||| | || ||| ||||| ||| ||||| Sbjct 358 TTAAGTT---CG------AAGCCAAG----------ACCTCTCCCCTTAATCTTGCAGCA 318 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||| |||||||| ||||| || Sbjct 317 CCGGGCAGGTGTCAGTCCCTATACATC 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701994982016