Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq221 152 1e-34 seq898 82.4 2e-13 >seq221 Length=825 Score = 152 bits (168), Expect = 1e-34 Identities = 153/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 85 GAAGTTTACAA-TCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCG 143 || |||||||| || ||| | |||||||| |||||| | ||| |||| || ||| Sbjct 403 GAGGTTTACAACTCAGTA-AGTCTTCATCCCTCACGCGGTATTGCTCTGTCAGGCTTTCG 461 Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 |||||| || |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 462 CCCATTGCAGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 521 Query 204 CAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263 || ||||| || | |||||||||| | ||| ||||| | || ||| |||| ||||| Sbjct 522 CAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACC 581 Query 264 CCGCCTACTACCTAAT 279 | || |||| ||||| Sbjct 582 CTACCAACTAGCTAAT 597 >seq898 Length=506 Score = 82.4 bits (90), Expect = 2e-13 Identities = 123/171 (72%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACT-TGGCTGGTTCAGACTC 140 ||||| ||||||| | | | |||||||| ||| | || | | ||||| ||| || Sbjct 169 AAAGAGTTTTACAACTTGAA-AGCCTTCATCACTCATG-TAGTATTGCTGGATCAAGCTT 112 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| ||||| |||| |||||||||||||| |||| | || ||| || |||||||| Sbjct 111 TCGCTCATTGTCCAAAATTCCTCACTGCTGGCTCCAAATGAAGCCTGGGCCTTGTCTCAG 52 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGG 251 | ||| ||||| | | ||||||||||| ||| ||| |||||| || Sbjct 51 TCCCAGTGTGGCTGTACAACCTCTCAGAACAGCTAAGGATCATAGGCTTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068545721792