Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq859 329 1e-87 >seq859 Length=748 Score = 329 bits (364), Expect = 1e-87 Identities = 299/373 (80%), Gaps = 14/373 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||| | ||| ||| ||| | || |||||||||||||||||| Sbjct 367 GTTCTCATTCCAATTGCCAGAGTTAAAC---CCCGGCATTGTTATTTATTGTCACTACCT 311 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 310 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTC 251 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| Sbjct 250 TCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCTCCGTTACCCGTTAGAGCCATGGTA 191 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || ||||||||| |||| |||||||||||||| |||||||| | |||| ||| Sbjct 190 GGCCAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGATTCGTCGCTGGCC 131 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG---GGCGTT 297 ||| | ||||| || ||||||| |||| |||||| || | | || || Sbjct 130 GAAG--CTAGCGATCCGCAAAGTTATCATGATTCACCACAATACCGGGTTGCCCCGCATT 73 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATT 352 || ||| ||||||||||||||| ||| ||||| ||| ||| || ||||||||| Sbjct 72 GG-TTTCTATCTAATAAATACATCCCGTCCGACAAGCAGTTGGGAGTTGATGCATGTATT 14 Query 353 AGCTCTAGAATTA 365 ||||||||||||| Sbjct 13 AGCTCTAGAATTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510040660736