Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016-
04-08] 23,791 sequences; 33,508,916 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq859 329 1e-87
>seq859
Length=748
Score = 329 bits (364), Expect = 1e-87
Identities = 299/373 (80%), Gaps = 14/373 (4%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|| |||||||||||| | ||| ||| ||| | || ||||||||||||||||||
Sbjct 367 GTTCTCATTCCAATTGCCAGAGTTAAAC---CCCGGCATTGTTATTTATTGTCACTACCT 311
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 310 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTC 251
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 250 TCTCAGGCTCCCTCTCCGGAATCGAACCCCAATTCTCCGTTACCCGTTAGAGCCATGGTA 191
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || ||||||||| |||| |||||||||||||| |||||||| | |||| |||
Sbjct 190 GGCCAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGATTCGTCGCTGGCC 131
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG---GGCGTT 297
||| | ||||| || ||||||| |||| |||||| || | | || ||
Sbjct 130 GAAG--CTAGCGATCCGCAAAGTTATCATGATTCACCACAATACCGGGTTGCCCCGCATT 73
Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATT 352
|| ||| ||||||||||||||| ||| ||||| ||| ||| || |||||||||
Sbjct 72 GG-TTTCTATCTAATAAATACATCCCGTCCGACAAGCAGTTGGGAGTTGATGCATGTATT 14
Query 353 AGCTCTAGAATTA 365
|||||||||||||
Sbjct 13 AGCTCTAGAATTA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510040660736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |